Difference between revisions of "TSS:Hg 10287.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.19 |distance_to_tss=50 |entrez_id=6723 |gc_percent=0.870647 |gene_alias=PAPT|SPDSY|SPS1|SRML1 |gene_description=spermidine synthase |gene_name=SRM |...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |SPDSY= | ||
| + | |SPS1= | ||
| + | |SRML1= | ||
| + | |all_trans=BC000309:-9 BC033106:11 ENST00000459997.1:-29 uc057cff.1:-29 EU831469:32 EU831556:32 ENST00000376957.6:-33 uc001arz.2:-33 M34338:-33 KJ897602:33 NM_003132:-43 ENST00000487300.1:291 uc057cfg.1:291 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.19 | |cpg_percent=0.19 | ||
| + | |distance=-9 | ||
|distance_to_tss=50 | |distance_to_tss=50 | ||
| + | |end=11059991 | ||
|entrez_id=6723 | |entrez_id=6723 | ||
|gc_percent=0.870647 | |gc_percent=0.870647 | ||
|gene_alias=PAPT|SPDSY|SPS1|SRML1 | |gene_alias=PAPT|SPDSY|SPS1|SRML1 | ||
|gene_description=spermidine synthase | |gene_description=spermidine synthase | ||
| − | |gene_name=SRM | + | |gene_id=6723 |
| + | |gene_name=spermidine synthase | ||
| + | |gene_source=HGNC:11296 | ||
| + | |gene_symbol=SRM | ||
| + | |gene_synonyms=SPS1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11296 | ||
|nearest_ensembl=ENSG00000116649 | |nearest_ensembl=ENSG00000116649 | ||
|nearest_promoter_id=NM_003132 | |nearest_promoter_id=NM_003132 | ||
|nearest_refseq=NM_003132 | |nearest_refseq=NM_003132 | ||
|nearest_unigene=Hs.76244 | |nearest_unigene=Hs.76244 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=11059976 | ||
| + | |strand=- | ||
| + | |transcript_name=BC000309 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10287.1 | |tss_id=hg_10287.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:44, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC000309 |
|---|---|
| Distance: | -9 |
| Num_trans: | 13 |
| All_trans: | BC000309:-9 BC033106:11 ENST00000459997.1:-29 uc057cff.1:-29 EU831469:32 EU831556:32 ENST00000376957.6:-33 uc001arz.2:-33 M34338:-33 KJ897602:33 NM_003132:-43 ENST00000487300.1:291 uc057cfg.1:291 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NM_003132 |
| Entrez ID: | 6723 |
| Nearest Unigene: | Hs.76244 |
| Nearest Refseq: | NM_003132 |
| Nearest Ensembl: | ENSG00000116649 |
| Gene Name: | spermidine synthase |
| Gene Alias: | PAPT |
| Gene Description: | spermidine synthase |
| Gene Type: | protein-coding |
| CpG%: | 0.19 |
| GC%: | 0.870647 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
