Difference between revisions of "TSS:Hg 102874.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=3365 |entrez_id=2889 |gc_percent=0.457711 |gene_alias=C3G|GRF2 |gene_description=Rap guanine nucleotide exchange factor 1 |gene...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |GRF2= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance= | ||
|distance_to_tss=3365 | |distance_to_tss=3365 | ||
| + | |end=131734180 | ||
|entrez_id=2889 | |entrez_id=2889 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_005312 | |nearest_refseq=NM_005312 | ||
|nearest_unigene=Hs.127897 | |nearest_unigene=Hs.127897 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=131734166 | ||
| + | |strand=- | ||
|tata_box="-34(GCCTTTATAGAG,+,0.00),-34(GCCTTTATAGAG,-,0.00),-32(CTTTATAGAGCA,+,0.00)" | |tata_box="-34(GCCTTTATAGAG,+,0.00),-34(GCCTTTATAGAG,-,0.00),-32(CTTTATAGAGCA,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_102874.1 | |tss_id=hg_102874.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 19:45, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 3365 |
|---|---|
| Nearest PromoterID: | NM_005312 |
| Entrez ID: | 2889 |
| Nearest Unigene: | Hs.127897 |
| Nearest Refseq: | NM_005312 |
| Nearest Ensembl: | ENSG00000107263 |
| Gene Name: | RAPGEF1 |
| Gene Alias: | C3G |
| Gene Description: | Rap guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GCCTTTATAGAG,+,0.00),-34(GCCTTTATAGAG,-,0.00),-32(CTTTATAGAGCA,+,0.00)" |
