Difference between revisions of "TSS:Hg 102877.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.21 |distance_to_tss=20 |entrez_id=2889 |gc_percent=0.875622 |gene_alias=C3G|GRF2 |gene_description=Rap guanine nucleotide exchange factor 1 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GRF2= | ||
| + | |all_trans=ENST00000438647.3:-16 NM_001304275:-16 uc064wrq.1:-16 CR749354:75 EU832841:90 GQ129245:90 AB385202:90 ENST00000372195.5:-146 uc064wrl.1:-146 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.21 | |cpg_percent=0.21 | ||
| + | |distance=-16 | ||
|distance_to_tss=20 | |distance_to_tss=20 | ||
| + | |end=131739928 | ||
|entrez_id=2889 | |entrez_id=2889 | ||
|gc_percent=0.875622 | |gc_percent=0.875622 | ||
|gene_alias=C3G|GRF2 | |gene_alias=C3G|GRF2 | ||
|gene_description=Rap guanine nucleotide exchange factor 1 | |gene_description=Rap guanine nucleotide exchange factor 1 | ||
| − | |gene_name=RAPGEF1 | + | |gene_id=2889 |
| + | |gene_name=Rap guanine nucleotide exchange factor 1 | ||
| + | |gene_source=HGNC:4568 | ||
| + | |gene_symbol=RAPGEF1 | ||
| + | |gene_synonyms=C3G | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4568 | ||
|nearest_ensembl=ENSG00000107263 | |nearest_ensembl=ENSG00000107263 | ||
|nearest_promoter_id=NM_001304275 | |nearest_promoter_id=NM_001304275 | ||
|nearest_refseq=NM_005312 | |nearest_refseq=NM_005312 | ||
|nearest_unigene=Hs.127897 | |nearest_unigene=Hs.127897 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=131739919 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000438647.3 NM_001304275 uc064wrq.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102877.1 | |tss_id=hg_102877.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q13905 Q5JUE9 | ||
}} | }} | ||
Revision as of 19:45, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000438647.3 NM_001304275 uc064wrq.1 |
|---|---|
| Distance: | -16 |
| Num_trans: | 9 |
| All_trans: | ENST00000438647.3:-16 NM_001304275:-16 uc064wrq.1:-16 CR749354:75 EU832841:90 GQ129245:90 AB385202:90 ENST00000372195.5:-146 uc064wrl.1:-146 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_001304275 |
| Entrez ID: | 2889 |
| Nearest Unigene: | Hs.127897 |
| Nearest Refseq: | NM_005312 |
| Nearest Ensembl: | ENSG00000107263 |
| Gene Name: | Rap guanine nucleotide exchange factor 1 |
| Gene Alias: | C3G |
| Gene Description: | Rap guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.21 |
| GC%: | 0.875622 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
