Difference between revisions of "TSS:Hg 102892.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=60 |entrez_id=23064 |gc_percent=0.726368 |gene_alias=ALS4|AOA2|SCAR1|bA479K20.2 |gene_description=senataxin |gene_name=SETX |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AOA2= | ||
| + | |SCAR1= | ||
| + | |all_trans=BX537849:-37 AK307608:-37 ENST00000224140.5:-53 NM_015046:-53 uc004cbk.4:-53 BX538166:-53 AK125448:63 | ||
| + | |bA479K20.2= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=-37 | ||
|distance_to_tss=60 | |distance_to_tss=60 | ||
| + | |end=132354932 | ||
|entrez_id=23064 | |entrez_id=23064 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=ALS4|AOA2|SCAR1|bA479K20.2 | |gene_alias=ALS4|AOA2|SCAR1|bA479K20.2 | ||
|gene_description=senataxin | |gene_description=senataxin | ||
| − | |gene_name=SETX | + | |gene_id=23064 |
| + | |gene_name=senataxin | ||
| + | |gene_source=HGNC:445 | ||
| + | |gene_symbol=SETX | ||
| + | |gene_synonyms=AOA2 KIAA0625 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:445 | ||
|nearest_ensembl=ENSG00000107290 | |nearest_ensembl=ENSG00000107290 | ||
|nearest_promoter_id=NM_015046 | |nearest_promoter_id=NM_015046 | ||
|nearest_refseq=NM_015046 | |nearest_refseq=NM_015046 | ||
|nearest_unigene=Hs.460317 | |nearest_unigene=Hs.460317 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=132354918 | ||
| + | |strand=- | ||
| + | |transcript_name=BX537849 AK307608 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102892.1 | |tss_id=hg_102892.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:45, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BX537849 AK307608 |
|---|---|
| Distance: | -37 |
| Num_trans: | 7 |
| All_trans: | BX537849:-37 AK307608:-37 ENST00000224140.5:-53 NM_015046:-53 uc004cbk.4:-53 BX538166:-53 AK125448:63 |
TATA-Box annotation
| Distance to TSS: | 60 |
|---|---|
| Nearest PromoterID: | NM_015046 |
| Entrez ID: | 23064 |
| Nearest Unigene: | Hs.460317 |
| Nearest Refseq: | NM_015046 |
| Nearest Ensembl: | ENSG00000107290 |
| Gene Name: | senataxin |
| Gene Alias: | ALS4 |
| Gene Description: | senataxin |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
