Difference between revisions of "TSS:Hg 102895.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=-40 |entrez_id=23064 |gc_percent=0.751244 |gene_alias=ALS4|AOA2|SCAR1|bA479K20.2 |gene_description=senataxin |gene_name=SETX |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AOA2= | ||
| + | |SCAR1= | ||
| + | |all_trans=ENST00000224140.5:35 NM_015046:35 uc004cbk.4:35 BX538166:35 BX537849:51 AK307608:51 AK125448:164 | ||
| + | |bA479K20.2= | ||
| + | |chr=chr9 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=35 | ||
|distance_to_tss=-40 | |distance_to_tss=-40 | ||
| + | |end=132355030 | ||
|entrez_id=23064 | |entrez_id=23064 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=ALS4|AOA2|SCAR1|bA479K20.2 | |gene_alias=ALS4|AOA2|SCAR1|bA479K20.2 | ||
|gene_description=senataxin | |gene_description=senataxin | ||
| − | |gene_name=SETX | + | |gene_id=23064 |
| + | |gene_name=senataxin | ||
| + | |gene_source=HGNC:445 | ||
| + | |gene_symbol=SETX | ||
| + | |gene_synonyms=AOA2 KIAA0625 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:445 | ||
|nearest_ensembl=ENSG00000107290 | |nearest_ensembl=ENSG00000107290 | ||
|nearest_promoter_id=NM_015046 | |nearest_promoter_id=NM_015046 | ||
|nearest_refseq=NM_015046 | |nearest_refseq=NM_015046 | ||
|nearest_unigene=Hs.460317 | |nearest_unigene=Hs.460317 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=132355019 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000224140.5 NM_015046 uc004cbk.4 BX538166 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102895.1 | |tss_id=hg_102895.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q7Z333 | ||
}} | }} | ||
Revision as of 19:46, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000224140.5 NM_015046 uc004cbk.4 BX538166 |
|---|---|
| Distance: | 35 |
| Num_trans: | 7 |
| All_trans: | ENST00000224140.5:35 NM_015046:35 uc004cbk.4:35 BX538166:35 BX537849:51 AK307608:51 AK125448:164 |
TATA-Box annotation
| Distance to TSS: | -40 |
|---|---|
| Nearest PromoterID: | NM_015046 |
| Entrez ID: | 23064 |
| Nearest Unigene: | Hs.460317 |
| Nearest Refseq: | NM_015046 |
| Nearest Ensembl: | ENSG00000107290 |
| Gene Name: | senataxin |
| Gene Alias: | ALS4 |
| Gene Description: | senataxin |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
