Difference between revisions of "TSS:Hg 102906.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=-55 |entrez_id=9329 |gc_percent=0.716418 |gene_alias=KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA |gene_description=g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TF3C-delta= | ||
| + | |TFIII90= | ||
| + | |TFIIIC290= | ||
| + | |TFIIIC90= | ||
| + | |TFIIICDELTA= | ||
| + | |all_trans=AK027002:0 AK225350:0 AK225121:13 AK304715:-25 ENST00000438527.7:-36 uc064wsj.1:-36 BC012726:-36 BC156832:-258 ENST00000372159.7:-410 ENST00000372153.5:-410 ENST00000310532.6:-410 ENST00000480876.2:-410 ENST00000482620.1:-410 NM_022779:-410 NM_138620:-410 uc064wsi.1:-410 uc004cbq.1:-410 uc004cbr.1:-410 uc004cbs.3:-410 uc064wsl.1:-410 AF427339:-410 AF335568:-410 AF335569:-410 AK027484:-410 AF335567:-410 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=-55 | |distance_to_tss=-55 | ||
| + | |end=132669991 | ||
|entrez_id=9329 | |entrez_id=9329 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA | |gene_alias=KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA | ||
|gene_description=general transcription factor IIIC subunit 4 | |gene_description=general transcription factor IIIC subunit 4 | ||
| − | |gene_name= | + | |gene_id=64794 |
| + | |gene_name=DEAD-box helicase 31 | ||
| + | |gene_source=HGNC:16715 | ||
| + | |gene_symbol=DDX31 | ||
| + | |gene_synonyms=FLJ13633 FLJ14578 FLJ23349 PPP1R25 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16715 | ||
|nearest_ensembl=ENSG00000125484 | |nearest_ensembl=ENSG00000125484 | ||
|nearest_promoter_id=NR_133925 | |nearest_promoter_id=NR_133925 | ||
|nearest_refseq=NM_012204 | |nearest_refseq=NM_012204 | ||
|nearest_unigene=Hs.22302 | |nearest_unigene=Hs.22302 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=132669969 | ||
| + | |strand=- | ||
| + | |transcript_name=AK027002 AK225350 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102906.1 | |tss_id=hg_102906.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:46, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK027002 AK225350 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | AK027002:0 AK225350:0 AK225121:13 AK304715:-25 ENST00000438527.7:-36 uc064wsj.1:-36 BC012726:-36 BC156832:-258 ENST00000372159.7:-410 ENST00000372153.5:-410 ENST00000310532.6:-410 ENST00000480876.2:-410 ENST00000482620.1:-410 NM_022779:-410 NM_138620:-410 uc064wsi.1:-410 uc004cbq.1:-410 uc004cbr.1:-410 uc004cbs.3:-410 uc064wsl.1:-410 AF427339:-410 AF335568:-410 AF335569:-410 AK027484:-410 AF335567:-410 |
TATA-Box annotation
| Distance to TSS: | -55 |
|---|---|
| Nearest PromoterID: | NR_133925 |
| Entrez ID: | 9329 |
| Nearest Unigene: | Hs.22302 |
| Nearest Refseq: | NM_012204 |
| Nearest Ensembl: | ENSG00000125484 |
| Gene Name: | DEAD-box helicase 31 |
| Gene Alias: | KAT12 |
| Gene Description: | general transcription factor IIIC subunit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
