Difference between revisions of "TSS:Hg 102918.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=40 |entrez_id=7248 |gc_percent=0.651741 |gene_alias=LAM|TSC |gene_description=tuberous sclerosis 1 |gene_name=TSC1 |gene_type=pr...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TSC= | ||
| + | |all_trans=ENST00000493467.5:0 uc064wst.1:0 AB190910:0 BC121000:0 BC047772:-7 AK303030:-17 AK308412:-17 ENST00000475903.5:-20 uc064wsv.1:-20 AK297326:-20 ENST00000298552.7:-22 ENST00000490179.2:-22 uc004cca.3:-22 uc064wsw.1:-22 AF013168:-22 BC108668:-24 ENST00000403810.5:-34 NM_001162426:-34 NM_000368:-34 NM_001162427:-34 uc004cce.2:-34 AK299654:-34 BC070032:-34 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=0 | ||
|distance_to_tss=40 | |distance_to_tss=40 | ||
| + | |end=132944599 | ||
|entrez_id=7248 | |entrez_id=7248 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=LAM|TSC | |gene_alias=LAM|TSC | ||
|gene_description=tuberous sclerosis 1 | |gene_description=tuberous sclerosis 1 | ||
| − | |gene_name=TSC1 | + | |gene_id=7248 |
| + | |gene_name=tuberous sclerosis 1 | ||
| + | |gene_source=HGNC:12362 | ||
| + | |gene_symbol=TSC1 | ||
| + | |gene_synonyms=KIAA0243 LAM hamartin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12362 | ||
|nearest_ensembl=ENSG00000165699 | |nearest_ensembl=ENSG00000165699 | ||
|nearest_promoter_id=NM_001162426 | |nearest_promoter_id=NM_001162426 | ||
|nearest_refseq=NM_000368 | |nearest_refseq=NM_000368 | ||
|nearest_unigene=Hs.370854 | |nearest_unigene=Hs.370854 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=132944587 | ||
| + | |strand=- | ||
|tata_box="74(TCCTTTTTATGG,-,0.00),76(CTTTTTATGGGG,+,0.00)" | |tata_box="74(TCCTTTTTATGG,-,0.00),76(CTTTTTATGGGG,+,0.00)" | ||
| + | |transcript_name=ENST00000493467.5 uc064wst.1 AB190910 BC121000 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102918.1 | |tss_id=hg_102918.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q0VAM5 Q59IT9 | ||
}} | }} | ||
Revision as of 19:47, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000493467.5 uc064wst.1 AB190910 BC121000 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000493467.5:0 uc064wst.1:0 AB190910:0 BC121000:0 BC047772:-7 AK303030:-17 AK308412:-17 ENST00000475903.5:-20 uc064wsv.1:-20 AK297326:-20 ENST00000298552.7:-22 ENST00000490179.2:-22 uc004cca.3:-22 uc064wsw.1:-22 AF013168:-22 BC108668:-24 ENST00000403810.5:-34 NM_001162426:-34 NM_000368:-34 NM_001162427:-34 uc004cce.2:-34 AK299654:-34 BC070032:-34 |
TATA-Box annotation
| Distance to TSS: | 40 |
|---|---|
| Nearest PromoterID: | NM_001162426 |
| Entrez ID: | 7248 |
| Nearest Unigene: | Hs.370854 |
| Nearest Refseq: | NM_000368 |
| Nearest Ensembl: | ENSG00000165699 |
| Gene Name: | tuberous sclerosis 1 |
| Gene Alias: | LAM |
| Gene Description: | tuberous sclerosis 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "74(TCCTTTTTATGG,-,0.00),76(CTTTTTATGGGG,+,0.00)" |
