Difference between revisions of "TSS:Hg 102919.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=18 |entrez_id=7248 |gc_percent=0.636816 |gene_alias=LAM|TSC |gene_description=tuberous sclerosis 1 |gene_name=TSC1 |gene_type=p...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TSC= | ||
| + | |all_trans=ENST00000298552.7:0 ENST00000475903.5:0 ENST00000490179.2:0 uc004cca.3:0 uc064wsv.1:0 uc064wsw.1:0 AF013168:0 AK303030:0 AK308412:0 BC108668:0 AK297326:0 BC047772:0 ENST00000403810.5:-3 NM_001162426:-3 NM_000368:-3 NM_001162427:-3 uc004cce.2:-3 AK299654:-3 BC070032:-3 ENST00000493467.5:6 uc064wst.1:6 AB190910:6 BC121000:11 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=0 | ||
|distance_to_tss=18 | |distance_to_tss=18 | ||
| + | |end=132944630 | ||
|entrez_id=7248 | |entrez_id=7248 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=LAM|TSC | |gene_alias=LAM|TSC | ||
|gene_description=tuberous sclerosis 1 | |gene_description=tuberous sclerosis 1 | ||
| − | |gene_name=TSC1 | + | |gene_id=7248 |
| + | |gene_name=tuberous sclerosis 1 | ||
| + | |gene_source=HGNC:12362 | ||
| + | |gene_symbol=TSC1 | ||
| + | |gene_synonyms=KIAA0243 LAM hamartin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12362 | ||
|nearest_ensembl=ENSG00000165699 | |nearest_ensembl=ENSG00000165699 | ||
|nearest_promoter_id=NM_001162426 | |nearest_promoter_id=NM_001162426 | ||
|nearest_refseq=NM_000368 | |nearest_refseq=NM_000368 | ||
|nearest_unigene=Hs.370854 | |nearest_unigene=Hs.370854 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=132944600 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000298552.7 ENST00000475903.5 ENST00000490179.2 uc004cca.3 uc064wsv.1 uc064wsw.1 AF013168 AK303030 AK308412 BC108668 AK297326 BC047772 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102919.1 | |tss_id=hg_102919.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z4G2 Q32NF0 X5D9D2 | ||
}} | }} | ||
Revision as of 19:47, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000298552.7 ENST00000475903.5 ENST00000490179.2 uc004cca.3 uc064wsv.1 uc064wsw.1 AF013168 AK303030 AK308412 BC108668 AK297326 BC047772 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000298552.7:0 ENST00000475903.5:0 ENST00000490179.2:0 uc004cca.3:0 uc064wsv.1:0 uc064wsw.1:0 AF013168:0 AK303030:0 AK308412:0 BC108668:0 AK297326:0 BC047772:0 ENST00000403810.5:-3 NM_001162426:-3 NM_000368:-3 NM_001162427:-3 uc004cce.2:-3 AK299654:-3 BC070032:-3 ENST00000493467.5:6 uc064wst.1:6 AB190910:6 BC121000:11 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001162426 |
| Entrez ID: | 7248 |
| Nearest Unigene: | Hs.370854 |
| Nearest Refseq: | NM_000368 |
| Nearest Ensembl: | ENSG00000165699 |
| Gene Name: | tuberous sclerosis 1 |
| Gene Alias: | LAM |
| Gene Description: | tuberous sclerosis 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
