Difference between revisions of "TSS:Hg 102968.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=35 |entrez_id=26301 |gc_percent=0.701493 |gene_alias=A3GALNT|FS|UNQ2513 |gene_description="globoside alpha-1,3-N-acetylgalactosa...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |FS= | ||
| + | |UNQ2513= | ||
| + | |all_trans=ENST00000372043.7:0 ENST00000470431.5:0 ENST00000472281.5:0 ENST00000487864.1:0 uc033djx.2:0 uc064wtr.1:0 uc064wts.1:0 uc064wtv.1:0 AK293997:0 AK074639:0 AK074944:0 AK291498:0 AK303825:0 AK307687:0 AF163572:0 AK314097:0 ENST00000372038.7:3 uc064wtt.1:3 BC032499:3 ENST00000372036.3:5 uc064wtu.1:5 AY358175:6 ENST00000540636.5:-25 ENST00000372040.7:-25 NM_001282632:-25 NM_001282629:-25 NM_001288573:-25 NM_001288572:-25 NM_021996:-25 uc011mcx.3:-25 uc004ccw.5:-25 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=0 | ||
|distance_to_tss=35 | |distance_to_tss=35 | ||
| + | |end=133163920 | ||
|entrez_id=26301 | |entrez_id=26301 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=A3GALNT|FS|UNQ2513 | |gene_alias=A3GALNT|FS|UNQ2513 | ||
|gene_description="globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" | |gene_description="globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" | ||
| − | |gene_name=GBGT1 | + | |gene_id=26301 |
| + | |gene_name="globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" | ||
| + | |gene_source=HGNC:20460 | ||
| + | |gene_symbol=GBGT1 | ||
| + | |gene_synonyms=A3GALNT FS MGC44848 UDP-GalNAc | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:20460 | ||
|nearest_ensembl=ENSG00000148288 | |nearest_ensembl=ENSG00000148288 | ||
|nearest_promoter_id=NM_001288572 | |nearest_promoter_id=NM_001288572 | ||
|nearest_refseq=NM_021996 | |nearest_refseq=NM_021996 | ||
|nearest_unigene=Hs.495419 | |nearest_unigene=Hs.495419 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=133163899 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000372043.7 ENST00000470431.5 ENST00000472281.5 ENST00000487864.1 uc033djx.2 uc064wtr.1 uc064wts.1 uc064wtv.1 AK293997 AK074639 AK074944 AK291498 AK303825 AK307687 AF163572 AK314097 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102968.1 | |tss_id=hg_102968.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q8N5D6 | ||
}} | }} | ||
Revision as of 19:49, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000372043.7 ENST00000470431.5 ENST00000472281.5 ENST00000487864.1 uc033djx.2 uc064wtr.1 uc064wts.1 uc064wtv.1 AK293997 AK074639 AK074944 AK291498 AK303825 AK307687 AF163572 AK314097 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000372043.7:0 ENST00000470431.5:0 ENST00000472281.5:0 ENST00000487864.1:0 uc033djx.2:0 uc064wtr.1:0 uc064wts.1:0 uc064wtv.1:0 AK293997:0 AK074639:0 AK074944:0 AK291498:0 AK303825:0 AK307687:0 AF163572:0 AK314097:0 ENST00000372038.7:3 uc064wtt.1:3 BC032499:3 ENST00000372036.3:5 uc064wtu.1:5 AY358175:6 ENST00000540636.5:-25 ENST00000372040.7:-25 NM_001282632:-25 NM_001282629:-25 NM_001288573:-25 NM_001288572:-25 NM_021996:-25 uc011mcx.3:-25 uc004ccw.5:-25 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NM_001288572 |
| Entrez ID: | 26301 |
| Nearest Unigene: | Hs.495419 |
| Nearest Refseq: | NM_021996 |
| Nearest Ensembl: | ENSG00000148288 |
| Gene Name: | "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" |
| Gene Alias: | A3GALNT |
| Gene Description: | "globoside alpha-1,3-N-acetylgalactosaminyltransferase 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
