Difference between revisions of "TSS:Hg 102986.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=66 |entrez_id=6837 |gc_percent=0.631841 |gene_alias=MED24|SURF5|surf-5 |gene_description=mediator complex subunit 22 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SURF5= | ||
| + | |all_trans=ENST00000343730.9:0 ENST00000610888.4:0 ENST00000471524.1:0 ENST00000371999.5:0 ENST00000494177.6:0 ENST00000457204.2:0 ENST00000482295.1:0 uc004cdc.5:0 uc033dkf.2:0 uc064wug.1:0 uc064wuh.1:0 uc064wuj.1:0 uc064wuk.1:0 uc064wul.1:0 AJ224359:0 BC024225:0 BC040111:0 AJ224358:0 X85178:0 NM_181491:-16 NM_133640:-16 ENST00000446777.5:18 uc064wui.1:18 ENST00000614493.4:261 uc064wuf.1:261 AK126069:261 ENST00000610672.4:337 uc064wue.1:337 AK124518:337 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=66 | |distance_to_tss=66 | ||
| + | |end=133348140 | ||
|entrez_id=6837 | |entrez_id=6837 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=MED24|SURF5|surf-5 | |gene_alias=MED24|SURF5|surf-5 | ||
|gene_description=mediator complex subunit 22 | |gene_description=mediator complex subunit 22 | ||
| − | |gene_name=MED22 | + | |gene_id=6837 |
| + | |gene_name=mediator complex subunit 22 | ||
| + | |gene_source=HGNC:11477 | ||
| + | |gene_symbol=MED22 | ||
| + | |gene_synonyms=Med24 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11477 | ||
|nearest_ensembl=ENSG00000148297 | |nearest_ensembl=ENSG00000148297 | ||
|nearest_promoter_id=NM_181491 | |nearest_promoter_id=NM_181491 | ||
|nearest_refseq=NM_006752 | |nearest_refseq=NM_006752 | ||
|nearest_unigene=Hs.78354 | |nearest_unigene=Hs.78354 | ||
| + | |num_trans=29 | ||
| + | |species=human | ||
| + | |start=133348039 | ||
| + | |strand=- | ||
| + | |surf-5= | ||
| + | |transcript_name=ENST00000343730.9 ENST00000610888.4 ENST00000471524.1 ENST00000371999.5 ENST00000494177.6 ENST00000457204.2 ENST00000482295.1 uc004cdc.5 uc033dkf.2 uc064wug.1 uc064wuh.1 uc064wuj.1 uc064wuk.1 uc064wul.1 AJ224359 BC024225 BC040111 AJ224358 X85178 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102986.1 | |tss_id=hg_102986.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R8C5 E7EN96 E9PGW7 Q15528 Q5T8T7 | ||
}} | }} | ||
Revision as of 19:49, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000343730.9 ENST00000610888.4 ENST00000471524.1 ENST00000371999.5 ENST00000494177.6 ENST00000457204.2 ENST00000482295.1 uc004cdc.5 uc033dkf.2 uc064wug.1 uc064wuh.1 uc064wuj.1 uc064wuk.1 uc064wul.1 AJ224359 BC024225 BC040111 AJ224358 X85178 |
|---|---|
| Distance: | 0 |
| Num_trans: | 29 |
| All_trans: | ENST00000343730.9:0 ENST00000610888.4:0 ENST00000471524.1:0 ENST00000371999.5:0 ENST00000494177.6:0 ENST00000457204.2:0 ENST00000482295.1:0 uc004cdc.5:0 uc033dkf.2:0 uc064wug.1:0 uc064wuh.1:0 uc064wuj.1:0 uc064wuk.1:0 uc064wul.1:0 AJ224359:0 BC024225:0 BC040111:0 AJ224358:0 X85178:0 NM_181491:-16 NM_133640:-16 ENST00000446777.5:18 uc064wui.1:18 ENST00000614493.4:261 uc064wuf.1:261 AK126069:261 ENST00000610672.4:337 uc064wue.1:337 AK124518:337 |
TATA-Box annotation
| Distance to TSS: | 66 |
|---|---|
| Nearest PromoterID: | NM_181491 |
| Entrez ID: | 6837 |
| Nearest Unigene: | Hs.78354 |
| Nearest Refseq: | NM_006752 |
| Nearest Ensembl: | ENSG00000148297 |
| Gene Name: | mediator complex subunit 22 |
| Gene Alias: | MED24 |
| Gene Description: | mediator complex subunit 22 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
