Difference between revisions of "TSS:Hg 102990.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=6444 |entrez_id=6835 |gc_percent=0.383085 |gene_alias=SURF-2 |gene_description=surfeit 2 |gene_name=SURF2 |gene_type=protein-cod...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK026646:-184 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=-184 | ||
|distance_to_tss=6444 | |distance_to_tss=6444 | ||
| + | |end=133363004 | ||
|entrez_id=6835 | |entrez_id=6835 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
|gene_alias=SURF-2 | |gene_alias=SURF-2 | ||
|gene_description=surfeit 2 | |gene_description=surfeit 2 | ||
| − | |gene_name= | + | |gene_id=6836 |
| + | |gene_name=surfeit 4 | ||
| + | |gene_source=HGNC:11476 | ||
| + | |gene_symbol=SURF4 | ||
| + | |gene_synonyms=ERV29 FLJ22993 MGC102753 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148291 | |nearest_ensembl=ENSG00000148291 | ||
|nearest_promoter_id=NM_001278928 | |nearest_promoter_id=NM_001278928 | ||
|nearest_refseq=NM_017503 | |nearest_refseq=NM_017503 | ||
|nearest_unigene=Hs.159448 | |nearest_unigene=Hs.159448 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=133362974 | ||
| + | |strand=- | ||
|tata_box="65(CAGTATTAAAGG,-,0.00)" | |tata_box="65(CAGTATTAAAGG,-,0.00)" | ||
| + | |transcript_name=AK026646 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102990.1 | |tss_id=hg_102990.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:50, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK026646 |
|---|---|
| Distance: | -184 |
| Num_trans: | 1 |
| All_trans: | AK026646:-184 |
TATA-Box annotation
| Distance to TSS: | 6444 |
|---|---|
| Nearest PromoterID: | NM_001278928 |
| Entrez ID: | 6835 |
| Nearest Unigene: | Hs.159448 |
| Nearest Refseq: | NM_017503 |
| Nearest Ensembl: | ENSG00000148291 |
| Gene Name: | surfeit 4 |
| Gene Alias: | SURF-2 |
| Gene Description: | surfeit 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "65(CAGTATTAAAGG,-,0.00)" |
