Difference between revisions of "TSS:Hg 102998.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=71 |entrez_id=6836 |gc_percent=0.776119 |gene_alias=ERV29 |gene_description=surfeit 4 |gene_name=SURF4 |gene_type=protein-codin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000371989.7:0 ENST00000485435.6:0 uc004cdj.5:0 uc064wuz.1:0 AK315488:-13 AK295435:23 AK299656:26 AK303309:26 AK316480:26 AK300004:27 AF078866:28 AF078867:28 ENST00000371991.3:43 uc064wvc.1:43 BC111023:55 ENST00000545297.5:-61 ENST00000613129.4:-61 ENST00000618229.4:-61 NM_033161:-61 NM_001280792:-61 NM_001280791:-61 NM_001280790:-61 NM_001280789:-61 NM_001280793:-61 uc011mdd.4:-61 uc011mdb.4:-61 uc011mdc.4:-61 BX647961:67 ENST00000371982.3:76 uc064wvd.1:76 AK293434:86 ENST00000467910.5:95 uc064wvb.1:95 BC018741:97 AB528538:112 DQ892024:115 DQ895216:115 AM392907:115 KJ892231:116 CU676306:116 Y14820:138 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |distance=0 | ||
|distance_to_tss=71 | |distance_to_tss=71 | ||
| + | |end=133376105 | ||
|entrez_id=6836 | |entrez_id=6836 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=ERV29 | |gene_alias=ERV29 | ||
|gene_description=surfeit 4 | |gene_description=surfeit 4 | ||
| − | |gene_name=SURF4 | + | |gene_id=6836 |
| + | |gene_name=surfeit 4 | ||
| + | |gene_source=HGNC:11476 | ||
| + | |gene_symbol=SURF4 | ||
| + | |gene_synonyms=ERV29 FLJ22993 MGC102753 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148248 | |nearest_ensembl=ENSG00000148248 | ||
|nearest_promoter_id=NM_001280793 | |nearest_promoter_id=NM_001280793 | ||
|nearest_refseq=NM_033161 | |nearest_refseq=NM_033161 | ||
|nearest_unigene=Hs.512465 | |nearest_unigene=Hs.512465 | ||
| + | |num_trans=41 | ||
| + | |species=human | ||
| + | |start=133376085 | ||
| + | |strand=- | ||
|tata_box="-79(GCCCCTTTAAGA,-,0.00),-76(CCTTTAAGACGC,+,0.00),-38(GCCCCTTTAAGG,-,0.00),-37(CCCCTTTAAGGC,-,0.00),-36(CCCTTTAAGGCT,+,0.00)" | |tata_box="-79(GCCCCTTTAAGA,-,0.00),-76(CCTTTAAGACGC,+,0.00),-38(GCCCCTTTAAGG,-,0.00),-37(CCCCTTTAAGGC,-,0.00),-36(CCCTTTAAGGCT,+,0.00)" | ||
| + | |transcript_name=ENST00000371989.7 ENST00000485435.6 uc004cdj.5 uc064wuz.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102998.1 | |tss_id=hg_102998.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O15260 | ||
}} | }} | ||
Revision as of 19:50, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000371989.7 ENST00000485435.6 uc004cdj.5 uc064wuz.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 41 |
| All_trans: | ENST00000371989.7:0 ENST00000485435.6:0 uc004cdj.5:0 uc064wuz.1:0 AK315488:-13 AK295435:23 AK299656:26 AK303309:26 AK316480:26 AK300004:27 AF078866:28 AF078867:28 ENST00000371991.3:43 uc064wvc.1:43 BC111023:55 ENST00000545297.5:-61 ENST00000613129.4:-61 ENST00000618229.4:-61 NM_033161:-61 NM_001280792:-61 NM_001280791:-61 NM_001280790:-61 NM_001280789:-61 NM_001280793:-61 uc011mdd.4:-61 uc011mdb.4:-61 uc011mdc.4:-61 BX647961:67 ENST00000371982.3:76 uc064wvd.1:76 AK293434:86 ENST00000467910.5:95 uc064wvb.1:95 BC018741:97 AB528538:112 DQ892024:115 DQ895216:115 AM392907:115 KJ892231:116 CU676306:116 Y14820:138 |
TATA-Box annotation
| Distance to TSS: | 71 |
|---|---|
| Nearest PromoterID: | NM_001280793 |
| Entrez ID: | 6836 |
| Nearest Unigene: | Hs.512465 |
| Nearest Refseq: | NM_033161 |
| Nearest Ensembl: | ENSG00000148248 |
| Gene Name: | surfeit 4 |
| Gene Alias: | ERV29 |
| Gene Description: | surfeit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-79(GCCCCTTTAAGA,-,0.00),-76(CCTTTAAGACGC,+,0.00),-38(GCCCCTTTAAGG,-,0.00),-37(CCCCTTTAAGGC,-,0.00),-36(CCCTTTAAGGCT,+,0.00)" |
