Difference between revisions of "TSS:Hg 103093.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=44 |entrez_id=138162 |gc_percent=0.711443 |gene_alias=PIERCE1|RbEST47 |gene_description=chromosome 9 open reading frame 116 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RbEST47= | ||
| + | |all_trans=ENST00000429260.6:0 uc004cft.2:0 AY927868:0 KJ895521:0 DQ892784:0 DQ896031:0 NM_144654:-20 NM_001048265:-20 ENST00000419770.1:329 uc064wys.1:329 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=44 | |distance_to_tss=44 | ||
| + | |end=135499895 | ||
|entrez_id=138162 | |entrez_id=138162 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
|gene_alias=PIERCE1|RbEST47 | |gene_alias=PIERCE1|RbEST47 | ||
|gene_description=chromosome 9 open reading frame 116 | |gene_description=chromosome 9 open reading frame 116 | ||
| − | |gene_name=C9orf116 | + | |gene_id=138162 |
| + | |gene_name=chromosome 9 open reading frame 116 | ||
| + | |gene_source=HGNC:28435 | ||
| + | |gene_symbol=C9orf116 | ||
| + | |gene_synonyms=MGC29761 PIERCE1 RbEST47 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28435 | ||
|nearest_ensembl=ENSG00000160345 | |nearest_ensembl=ENSG00000160345 | ||
|nearest_promoter_id=NM_144654 | |nearest_promoter_id=NM_144654 | ||
|nearest_refseq=NM_144654 | |nearest_refseq=NM_144654 | ||
|nearest_unigene=Hs.414028 | |nearest_unigene=Hs.414028 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=135499846 | ||
| + | |strand=- | ||
|tata_box="-76(GCGCCTTTAAGG,-,0.00),-75(CGCCTTTAAGGC,-,0.00),-74(GCCTTTAAGGCC,+,0.00),-73(CCTTTAAGGCCC,+,0.00)" | |tata_box="-76(GCGCCTTTAAGG,-,0.00),-75(CGCCTTTAAGGC,-,0.00),-74(GCCTTTAAGGCC,+,0.00),-73(CCTTTAAGGCCC,+,0.00)" | ||
| + | |transcript_name=ENST00000429260.6 uc004cft.2 AY927868 KJ895521 DQ892784 DQ896031 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103093.1 | |tss_id=hg_103093.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5BN46 | ||
}} | }} | ||
Revision as of 19:54, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000429260.6 uc004cft.2 AY927868 KJ895521 DQ892784 DQ896031 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000429260.6:0 uc004cft.2:0 AY927868:0 KJ895521:0 DQ892784:0 DQ896031:0 NM_144654:-20 NM_001048265:-20 ENST00000419770.1:329 uc064wys.1:329 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_144654 |
| Entrez ID: | 138162 |
| Nearest Unigene: | Hs.414028 |
| Nearest Refseq: | NM_144654 |
| Nearest Ensembl: | ENSG00000160345 |
| Gene Name: | chromosome 9 open reading frame 116 |
| Gene Alias: | PIERCE1 |
| Gene Description: | chromosome 9 open reading frame 116 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-76(GCGCCTTTAAGG,-,0.00),-75(CGCCTTTAAGGC,-,0.00),-74(GCCTTTAAGGCC,+,0.00),-73(CCTTTAAGGCCC,+,0.00)" |
