Difference between revisions of "TSS:Hg 103109.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=-232 |entrez_id=157922 |gc_percent=0.845771 |gene_alias=- |gene_description=calmodulin regulated spectrin associated protein 1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000409386.3:116 uc064xae.1:116 ENST00000389532.8:120 uc004cgr.5:120 NM_015447:185 AF116701:206 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| + | |distance=116 | ||
|distance_to_tss=-232 | |distance_to_tss=-232 | ||
| + | |end=135907438 | ||
|entrez_id=157922 | |entrez_id=157922 | ||
|gc_percent=0.845771 | |gc_percent=0.845771 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=calmodulin regulated spectrin associated protein 1 | |gene_description=calmodulin regulated spectrin associated protein 1 | ||
| − | |gene_name=CAMSAP1 | + | |gene_id=157922 |
| + | |gene_name=calmodulin regulated spectrin associated protein 1 | ||
| + | |gene_source=HGNC:19946 | ||
| + | |gene_symbol=CAMSAP1 | ||
| + | |gene_synonyms=DKFZp434F195 FLJ31228 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19946 | ||
|nearest_ensembl=ENSG00000130559 | |nearest_ensembl=ENSG00000130559 | ||
|nearest_promoter_id=NM_015447 | |nearest_promoter_id=NM_015447 | ||
|nearest_refseq=NM_015447 | |nearest_refseq=NM_015447 | ||
|nearest_unigene=Hs.522493 | |nearest_unigene=Hs.522493 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=135907343 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000409386.3 uc064xae.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103109.1 | |tss_id=hg_103109.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T5Y3 | ||
}} | }} | ||
Revision as of 19:55, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000409386.3 uc064xae.1 |
|---|---|
| Distance: | 116 |
| Num_trans: | 6 |
| All_trans: | ENST00000409386.3:116 uc064xae.1:116 ENST00000389532.8:120 uc004cgr.5:120 NM_015447:185 AF116701:206 |
TATA-Box annotation
| Distance to TSS: | -232 |
|---|---|
| Nearest PromoterID: | NM_015447 |
| Entrez ID: | 157922 |
| Nearest Unigene: | Hs.522493 |
| Nearest Refseq: | NM_015447 |
| Nearest Ensembl: | ENSG00000130559 |
| Gene Name: | calmodulin regulated spectrin associated protein 1 |
| Gene Alias: | - |
| Gene Description: | calmodulin regulated spectrin associated protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
