Difference between revisions of "TSS:Hg 103137.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=-16 |entrez_id=8022 |gc_percent=0.825871 |gene_alias=CPHD3|LIM3|M2-LHX3 |gene_description=LIM homeobox 3 |gene_name=LHX3 |gene_t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LIM3= | ||
| + | |M2-LHX3= | ||
| + | |all_trans=NM_014564:12 AB593066:12 ENST00000371746.7:27 uc004cgz.3:27 AF156889:27 AB593065:37 BC152818:144 BC156735:144 AB590758:144 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=12 | ||
|distance_to_tss=-16 | |distance_to_tss=-16 | ||
| + | |end=136203194 | ||
|entrez_id=8022 | |entrez_id=8022 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
|gene_alias=CPHD3|LIM3|M2-LHX3 | |gene_alias=CPHD3|LIM3|M2-LHX3 | ||
|gene_description=LIM homeobox 3 | |gene_description=LIM homeobox 3 | ||
| − | |gene_name=LHX3 | + | |gene_id=8022 |
| + | |gene_name=LIM homeobox 3 | ||
| + | |gene_source=HGNC:6595 | ||
| + | |gene_symbol=LHX3 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:6595 | ||
|nearest_ensembl=ENSG00000107187 | |nearest_ensembl=ENSG00000107187 | ||
|nearest_promoter_id=NM_014564 | |nearest_promoter_id=NM_014564 | ||
|nearest_refseq=NM_014564 | |nearest_refseq=NM_014564 | ||
|nearest_unigene=Hs.148427 | |nearest_unigene=Hs.148427 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=136203184 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_014564 AB593066 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103137.1 | |tss_id=hg_103137.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F1T0D9 Q9UBR4 | ||
}} | }} | ||
Revision as of 19:56, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_014564 AB593066 |
|---|---|
| Distance: | 12 |
| Num_trans: | 9 |
| All_trans: | NM_014564:12 AB593066:12 ENST00000371746.7:27 uc004cgz.3:27 AF156889:27 AB593065:37 BC152818:144 BC156735:144 AB590758:144 |
TATA-Box annotation
| Distance to TSS: | -16 |
|---|---|
| Nearest PromoterID: | NM_014564 |
| Entrez ID: | 8022 |
| Nearest Unigene: | Hs.148427 |
| Nearest Refseq: | NM_014564 |
| Nearest Ensembl: | ENSG00000107187 |
| Gene Name: | LIM homeobox 3 |
| Gene Alias: | CPHD3 |
| Gene Description: | LIM homeobox 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
