Difference between revisions of "TSS:Hg 103198.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=19 |entrez_id=414332 |gc_percent=0.666667 |gene_alias=- |gene_description=lipocalin 10 |gene_name=LCN10 |gene_type=protein-codin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000341040.11:0 uc064xdg.1:0 ENST00000497771.5:-14 ENST00000527229.5:-14 ENST00000532006.1:-14 NM_001001712:-14 uc004civ.4:-14 uc011mee.3:-14 uc064xdj.1:-14 BC133045:-14 BC144440:-14 BC144441:-14 BC171741:-14 ENST00000474369.1:33 uc010nbq.4:33 AY301271:33 KJ900759:33 ENST00000406721.7:-411 uc064xdh.1:-411 BC040963:-411 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=19 | |distance_to_tss=19 | ||
| + | |end=136742945 | ||
|entrez_id=414332 | |entrez_id=414332 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=lipocalin 10 | |gene_description=lipocalin 10 | ||
| − | |gene_name=LCN10 | + | |gene_id=414332 |
| + | |gene_name=lipocalin 10 | ||
| + | |gene_source=HGNC:20892 | ||
| + | |gene_symbol=LCN10 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:20892 | ||
|nearest_ensembl=ENSG00000187922 | |nearest_ensembl=ENSG00000187922 | ||
|nearest_promoter_id=NM_001001712 | |nearest_promoter_id=NM_001001712 | ||
|nearest_refseq=NM_001001712 | |nearest_refseq=NM_001001712 | ||
|nearest_unigene=Hs.98132 | |nearest_unigene=Hs.98132 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=136742935 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000341040.11 uc064xdg.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103198.1 | |tss_id=hg_103198.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E9PRR3 | ||
}} | }} | ||
Revision as of 19:59, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000341040.11 uc064xdg.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000341040.11:0 uc064xdg.1:0 ENST00000497771.5:-14 ENST00000527229.5:-14 ENST00000532006.1:-14 NM_001001712:-14 uc004civ.4:-14 uc011mee.3:-14 uc064xdj.1:-14 BC133045:-14 BC144440:-14 BC144441:-14 BC171741:-14 ENST00000474369.1:33 uc010nbq.4:33 AY301271:33 KJ900759:33 ENST00000406721.7:-411 uc064xdh.1:-411 BC040963:-411 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_001001712 |
| Entrez ID: | 414332 |
| Nearest Unigene: | Hs.98132 |
| Nearest Refseq: | NM_001001712 |
| Nearest Ensembl: | ENSG00000187922 |
| Gene Name: | lipocalin 10 |
| Gene Alias: | - |
| Gene Description: | lipocalin 10 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
