Difference between revisions of "TSS:Hg 103209.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=192 |entrez_id=138307 |gc_percent=0.671642 |gene_alias=EP17|LCN5 |gene_description=lipocalin 8 |gene_name=LCN8 |gene_type=prote...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |LCN5= | ||
| + | |all_trans=ENST00000371688.7:-135 uc004cjb.2:-135 BC130465:-143 BC132714:-143 HQ258567:151 KJ895524:151 NM_178469:-188 AK126902:-188 BC042109:-197 ENST00000612714.1:-452 uc064xdu.1:-452 AY301268:-452 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=-135 | ||
|distance_to_tss=192 | |distance_to_tss=192 | ||
| + | |end=136758091 | ||
|entrez_id=138307 | |entrez_id=138307 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=EP17|LCN5 | |gene_alias=EP17|LCN5 | ||
|gene_description=lipocalin 8 | |gene_description=lipocalin 8 | ||
| − | |gene_name=LCN8 | + | |gene_id=138307 |
| + | |gene_name=lipocalin 8 | ||
| + | |gene_source=HGNC:27038 | ||
| + | |gene_symbol=LCN8 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:27038 | ||
|nearest_ensembl=ENSG00000204001 | |nearest_ensembl=ENSG00000204001 | ||
|nearest_promoter_id=NM_178469 | |nearest_promoter_id=NM_178469 | ||
|nearest_refseq=NM_178469 | |nearest_refseq=NM_178469 | ||
|nearest_unigene=Hs.323991 | |nearest_unigene=Hs.323991 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=136758082 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000371688.7 uc004cjb.2 | ||
| + | |tss_classification=no | ||
|tss_id=hg_103209.1 | |tss_id=hg_103209.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q6JVE9 | ||
}} | }} | ||
Revision as of 19:59, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000371688.7 uc004cjb.2 |
|---|---|
| Distance: | -135 |
| Num_trans: | 12 |
| All_trans: | ENST00000371688.7:-135 uc004cjb.2:-135 BC130465:-143 BC132714:-143 HQ258567:151 KJ895524:151 NM_178469:-188 AK126902:-188 BC042109:-197 ENST00000612714.1:-452 uc064xdu.1:-452 AY301268:-452 |
TATA-Box annotation
| Distance to TSS: | 192 |
|---|---|
| Nearest PromoterID: | NM_178469 |
| Entrez ID: | 138307 |
| Nearest Unigene: | Hs.323991 |
| Nearest Refseq: | NM_178469 |
| Nearest Ensembl: | ENSG00000204001 |
| Gene Name: | lipocalin 8 |
| Gene Alias: | EP17 |
| Gene Description: | lipocalin 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
