Difference between revisions of "TSS:Hg 10323.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=-618 |entrez_id=1185 |gc_percent=0.681592 |gene_alias=CLC-6 |gene_description=chloride voltage-gated channel 6 |gene_name=CLCN6...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000376585.5:63 ENST00000423400.5:63 ENST00000431243.5:63 uc001atd.2:63 uc057chs.1:63 uc057cht.1:63 AY046561:63 AY046562:63 AY046563:63 ENST00000413656.5:182 uc057chr.1:182 AY046565:182 BC053509:-445 ENST00000418034.1:-456 uc057chq.1:-456 AY046564:-456 AK312907:-484 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=63 | ||
|distance_to_tss=-618 | |distance_to_tss=-618 | ||
| + | |end=11805480 | ||
|entrez_id=1185 | |entrez_id=1185 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=CLC-6 | |gene_alias=CLC-6 | ||
|gene_description=chloride voltage-gated channel 6 | |gene_description=chloride voltage-gated channel 6 | ||
| − | |gene_name= | + | |gene_id=4524 |
| + | |gene_name=methylenetetrahydrofolate reductase (NAD(P)H) | ||
| + | |gene_source=HGNC:7436 | ||
| + | |gene_symbol=MTHFR | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7436 | ||
|nearest_ensembl=ENSG00000011021 | |nearest_ensembl=ENSG00000011021 | ||
|nearest_promoter_id=NM_001256959 | |nearest_promoter_id=NM_001256959 | ||
|nearest_refseq=NM_001286 | |nearest_refseq=NM_001286 | ||
|nearest_unigene=Hs.193043 | |nearest_unigene=Hs.193043 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=11805475 | ||
| + | |strand=- | ||
|tata_box="-32(CCTTTTAAACCT,+,0.00)" | |tata_box="-32(CCTTTTAAACCT,+,0.00)" | ||
| + | |transcript_name=ENST00000376585.5 ENST00000423400.5 ENST00000431243.5 uc001atd.2 uc057chs.1 uc057cht.1 AY046561 AY046562 AY046563 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10323.1 | |tss_id=hg_10323.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P42898 Q5SNW7 Q8IU67 | ||
}} | }} | ||
Revision as of 20:00, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000376585.5 ENST00000423400.5 ENST00000431243.5 uc001atd.2 uc057chs.1 uc057cht.1 AY046561 AY046562 AY046563 |
|---|---|
| Distance: | 63 |
| Num_trans: | 17 |
| All_trans: | ENST00000376585.5:63 ENST00000423400.5:63 ENST00000431243.5:63 uc001atd.2:63 uc057chs.1:63 uc057cht.1:63 AY046561:63 AY046562:63 AY046563:63 ENST00000413656.5:182 uc057chr.1:182 AY046565:182 BC053509:-445 ENST00000418034.1:-456 uc057chq.1:-456 AY046564:-456 AK312907:-484 |
TATA-Box annotation
| Distance to TSS: | -618 |
|---|---|
| Nearest PromoterID: | NM_001256959 |
| Entrez ID: | 1185 |
| Nearest Unigene: | Hs.193043 |
| Nearest Refseq: | NM_001286 |
| Nearest Ensembl: | ENSG00000011021 |
| Gene Name: | methylenetetrahydrofolate reductase (NAD(P)H) |
| Gene Alias: | CLC-6 |
| Gene Description: | chloride voltage-gated channel 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(CCTTTTAAACCT,+,0.00)" |
