Difference between revisions of "TSS:Hg 10324.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-188 |entrez_id=1185 |gc_percent=0.721393 |gene_alias=CLC-6 |gene_description=chloride voltage-gated channel 6 |gene_name=CLCN6...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC053509:-6 ENST00000418034.1:-17 uc057chq.1:-17 AY046564:-17 AK312907:-45 ENST00000376590.7:-139 uc001atc.3:-139 NM_005957:-184 ENST00000376585.5:485 ENST00000423400.5:485 ENST00000431243.5:485 uc001atd.2:485 uc057chs.1:485 uc057cht.1:485 AY046561:485 AY046562:485 AY046563:485 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-6 | ||
|distance_to_tss=-188 | |distance_to_tss=-188 | ||
| + | |end=11805919 | ||
|entrez_id=1185 | |entrez_id=1185 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=CLC-6 | |gene_alias=CLC-6 | ||
|gene_description=chloride voltage-gated channel 6 | |gene_description=chloride voltage-gated channel 6 | ||
| − | |gene_name= | + | |gene_id=4524 |
| + | |gene_name=methylenetetrahydrofolate reductase (NAD(P)H) | ||
| + | |gene_source=HGNC:7436 | ||
| + | |gene_symbol=MTHFR | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7436 | ||
|nearest_ensembl=ENSG00000011021 | |nearest_ensembl=ENSG00000011021 | ||
|nearest_promoter_id=NM_001256959 | |nearest_promoter_id=NM_001256959 | ||
|nearest_refseq=NM_001286 | |nearest_refseq=NM_001286 | ||
|nearest_unigene=Hs.193043 | |nearest_unigene=Hs.193043 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=11805897 | ||
| + | |strand=- | ||
| + | |transcript_name=BC053509 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10324.1 | |tss_id=hg_10324.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:00, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC053509 |
|---|---|
| Distance: | -6 |
| Num_trans: | 17 |
| All_trans: | BC053509:-6 ENST00000418034.1:-17 uc057chq.1:-17 AY046564:-17 AK312907:-45 ENST00000376590.7:-139 uc001atc.3:-139 NM_005957:-184 ENST00000376585.5:485 ENST00000423400.5:485 ENST00000431243.5:485 uc001atd.2:485 uc057chs.1:485 uc057cht.1:485 AY046561:485 AY046562:485 AY046563:485 |
TATA-Box annotation
| Distance to TSS: | -188 |
|---|---|
| Nearest PromoterID: | NM_001256959 |
| Entrez ID: | 1185 |
| Nearest Unigene: | Hs.193043 |
| Nearest Refseq: | NM_001286 |
| Nearest Ensembl: | ENSG00000011021 |
| Gene Name: | methylenetetrahydrofolate reductase (NAD(P)H) |
| Gene Alias: | CLC-6 |
| Gene Description: | chloride voltage-gated channel 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
