Difference between revisions of "TSS:Hg 103285.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.22 |distance_to_tss=-24 |entrez_id=20 |gc_percent=0.870647 |gene_alias=ABC2 |gene_description=ATP binding cassette subfamily A member 2 |gene_name=A...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000371605.7:19 ENST00000265662.9:19 NM_001606:19 uc064xhg.1:19 uc011mem.1:19 ENST00000341511.10:117 uc064xhf.1:117 AF178941:117 ENST00000494046.5:123 uc064xhx.1:123 AK308738:123 ENST00000464876.5:129 uc064xhw.1:129 BC090860:129 BC064542:131 ENST00000492260.5:136 uc064xht.1:136 BC029282:136 AF327657:161 AB384556:163 ENST00000425423.1:-490 uc064xib.1:-490 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.22 | |cpg_percent=0.22 | ||
| + | |distance=19 | ||
|distance_to_tss=-24 | |distance_to_tss=-24 | ||
| + | |end=137028317 | ||
|entrez_id=20 | |entrez_id=20 | ||
|gc_percent=0.870647 | |gc_percent=0.870647 | ||
|gene_alias=ABC2 | |gene_alias=ABC2 | ||
|gene_description=ATP binding cassette subfamily A member 2 | |gene_description=ATP binding cassette subfamily A member 2 | ||
| − | |gene_name=ABCA2 | + | |gene_id=20 |
| + | |gene_name=ATP binding cassette subfamily A member 2 | ||
| + | |gene_source=HGNC:32 | ||
| + | |gene_symbol=ABCA2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:32 | ||
|nearest_ensembl=ENSG00000107331 | |nearest_ensembl=ENSG00000107331 | ||
|nearest_promoter_id=NM_001606 | |nearest_promoter_id=NM_001606 | ||
|nearest_refseq=NM_001606 | |nearest_refseq=NM_001606 | ||
|nearest_unigene=Hs.421202 | |nearest_unigene=Hs.421202 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=137028306 | ||
| + | |strand=- | ||
|tata_box="-33(GCGCCTTTAAGC,-,0.00),-31(GCCTTTAAGCGG,+,0.00)" | |tata_box="-33(GCGCCTTTAAGC,-,0.00),-31(GCCTTTAAGCGG,+,0.00)" | ||
| + | |transcript_name=ENST00000371605.7 ENST00000265662.9 NM_001606 uc064xhg.1 uc011mem.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103285.1 | |tss_id=hg_103285.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=J3QSS3 Q9BZC7 | ||
}} | }} | ||
Revision as of 20:02, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000371605.7 ENST00000265662.9 NM_001606 uc064xhg.1 uc011mem.1 |
|---|---|
| Distance: | 19 |
| Num_trans: | 22 |
| All_trans: | ENST00000371605.7:19 ENST00000265662.9:19 NM_001606:19 uc064xhg.1:19 uc011mem.1:19 ENST00000341511.10:117 uc064xhf.1:117 AF178941:117 ENST00000494046.5:123 uc064xhx.1:123 AK308738:123 ENST00000464876.5:129 uc064xhw.1:129 BC090860:129 BC064542:131 ENST00000492260.5:136 uc064xht.1:136 BC029282:136 AF327657:161 AB384556:163 ENST00000425423.1:-490 uc064xib.1:-490 |
TATA-Box annotation
| Distance to TSS: | -24 |
|---|---|
| Nearest PromoterID: | NM_001606 |
| Entrez ID: | 20 |
| Nearest Unigene: | Hs.421202 |
| Nearest Refseq: | NM_001606 |
| Nearest Ensembl: | ENSG00000107331 |
| Gene Name: | ATP binding cassette subfamily A member 2 |
| Gene Alias: | ABC2 |
| Gene Description: | ATP binding cassette subfamily A member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.22 |
| GC%: | 0.870647 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GCGCCTTTAAGC,-,0.00),-31(GCCTTTAAGCGG,+,0.00)" |
