Difference between revisions of "TSS:Hg 103381.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=14 |entrez_id=26012 |gc_percent=0.81592 |gene_alias=HH9|NELF |gene_description=NMDA receptor synaptonuclear signaling and neuron...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |NELF= | ||
| + | |all_trans=ENST00000371475.7:0 ENST00000437259.5:0 ENST00000371474.7:0 ENST00000371473.7:0 ENST00000265663.11:0 ENST00000371472.6:0 NM_001178064:0 NM_001130971:0 NM_001130970:0 NM_001130969:0 NM_015537:0 uc004cmz.4:0 uc004cnb.4:0 uc004cnc.4:0 uc004cna.4:0 uc064xln.1:0 uc064xlp.1:0 AK074602:0 BC072412:0 AY255128:0 AY255129:0 AY255130:0 AY255131:0 AY255132:0 BC110498:96 KJ893508:194 KJ893509:194 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=14 | |distance_to_tss=14 | ||
| + | |end=137459343 | ||
|entrez_id=26012 | |entrez_id=26012 | ||
|gc_percent=0.81592 | |gc_percent=0.81592 | ||
|gene_alias=HH9|NELF | |gene_alias=HH9|NELF | ||
|gene_description=NMDA receptor synaptonuclear signaling and neuronal migration factor | |gene_description=NMDA receptor synaptonuclear signaling and neuronal migration factor | ||
| − | |gene_name=NSMF | + | |gene_id=26012 |
| + | |gene_name=NMDA receptor synaptonuclear signaling and neuronal migration factor | ||
| + | |gene_source=HGNC:29843 | ||
| + | |gene_symbol=NSMF | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29843 | ||
|nearest_ensembl=ENSG00000165802 | |nearest_ensembl=ENSG00000165802 | ||
|nearest_promoter_id=NM_001130971 | |nearest_promoter_id=NM_001130971 | ||
|nearest_refseq=NM_015537 | |nearest_refseq=NM_015537 | ||
|nearest_unigene=Hs.455336 | |nearest_unigene=Hs.455336 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=137459296 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000371475.7 ENST00000437259.5 ENST00000371474.7 ENST00000371473.7 ENST00000265663.11 ENST00000371472.6 NM_001178064 NM_001130971 NM_001130970 NM_001130969 NM_015537 uc004cmz.4 uc004cnb.4 uc004cnc.4 uc004cna.4 uc064xln.1 uc064xlp.1 AK074602 BC072412 AY255128 AY255129 AY255130 AY255131 AY255132 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103381.1 | |tss_id=hg_103381.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q6X4W1 | ||
}} | }} | ||
Revision as of 20:06, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371475.7 ENST00000437259.5 ENST00000371474.7 ENST00000371473.7 ENST00000265663.11 ENST00000371472.6 NM_001178064 NM_001130971 NM_001130970 NM_001130969 NM_015537 uc004cmz.4 uc004cnb.4 uc004cnc.4 uc004cna.4 uc064xln.1 uc064xlp.1 AK074602 BC072412 AY255128 AY255129 AY255130 AY255131 AY255132 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000371475.7:0 ENST00000437259.5:0 ENST00000371474.7:0 ENST00000371473.7:0 ENST00000265663.11:0 ENST00000371472.6:0 NM_001178064:0 NM_001130971:0 NM_001130970:0 NM_001130969:0 NM_015537:0 uc004cmz.4:0 uc004cnb.4:0 uc004cnc.4:0 uc004cna.4:0 uc064xln.1:0 uc064xlp.1:0 AK074602:0 BC072412:0 AY255128:0 AY255129:0 AY255130:0 AY255131:0 AY255132:0 BC110498:96 KJ893508:194 KJ893509:194 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_001130971 |
| Entrez ID: | 26012 |
| Nearest Unigene: | Hs.455336 |
| Nearest Refseq: | NM_015537 |
| Nearest Ensembl: | ENSG00000165802 |
| Gene Name: | NMDA receptor synaptonuclear signaling and neuronal migration factor |
| Gene Alias: | HH9 |
| Gene Description: | NMDA receptor synaptonuclear signaling and neuronal migration factor |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.81592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
