Difference between revisions of "TSS:Hg 103386.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=40 |entrez_id=92715 |gc_percent=0.79602 |gene_alias=C9orf112|RRT2|WDR85 |gene_description=diphthamide biosynthesis 7 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RRT2= | ||
| + | |WDR85= | ||
| + | |all_trans=ENST00000479650.5:0 ENST00000475100.5:0 ENST00000472113.5:0 ENST00000467768.5:0 ENST00000476303.1:0 ENST00000491359.1:0 uc064xlz.1:0 uc064xmc.1:0 uc064xmd.1:0 uc064xmf.1:0 uc022bqk.2:0 uc064xmk.1:0 BC003123:0 BC017335:0 BC016349:0 AK308998:0 AK307180:0 AK310987:0 ENST00000277540.6:-2 NM_138778:-2 uc004cnk.1:-2 AK075115:-2 CU675946:81 HQ448236:83 KJ895195:83 ENST00000460572.1:141 uc064xmj.1:141 ENST00000481839.5:309 uc064xmi.1:309 ENST00000470855.5:318 uc064xmh.1:318 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| + | |distance=0 | ||
|distance_to_tss=40 | |distance_to_tss=40 | ||
| + | |end=137578933 | ||
|entrez_id=92715 | |entrez_id=92715 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=C9orf112|RRT2|WDR85 | |gene_alias=C9orf112|RRT2|WDR85 | ||
|gene_description=diphthamide biosynthesis 7 | |gene_description=diphthamide biosynthesis 7 | ||
| − | |gene_name=DPH7 | + | |gene_id=92715 |
| + | |gene_name=diphthamide biosynthesis 7 | ||
| + | |gene_source=HGNC:25199 | ||
| + | |gene_symbol=DPH7 | ||
| + | |gene_synonyms=FLJ90634 RRT2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25199 | ||
|nearest_ensembl=ENSG00000148399 | |nearest_ensembl=ENSG00000148399 | ||
|nearest_promoter_id=NM_001346371 | |nearest_promoter_id=NM_001346371 | ||
|nearest_refseq=NM_138778 | |nearest_refseq=NM_138778 | ||
|nearest_unigene=Hs.292570 | |nearest_unigene=Hs.292570 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=137578857 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000479650.5 ENST00000475100.5 ENST00000472113.5 ENST00000467768.5 ENST00000476303.1 ENST00000491359.1 uc064xlz.1 uc064xmc.1 uc064xmd.1 uc064xmf.1 uc022bqk.2 uc064xmk.1 BC003123 BC017335 BC016349 AK308998 AK307180 AK310987 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103386.1 | |tss_id=hg_103386.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:07, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000479650.5 ENST00000475100.5 ENST00000472113.5 ENST00000467768.5 ENST00000476303.1 ENST00000491359.1 uc064xlz.1 uc064xmc.1 uc064xmd.1 uc064xmf.1 uc022bqk.2 uc064xmk.1 BC003123 BC017335 BC016349 AK308998 AK307180 AK310987 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000479650.5:0 ENST00000475100.5:0 ENST00000472113.5:0 ENST00000467768.5:0 ENST00000476303.1:0 ENST00000491359.1:0 uc064xlz.1:0 uc064xmc.1:0 uc064xmd.1:0 uc064xmf.1:0 uc022bqk.2:0 uc064xmk.1:0 BC003123:0 BC017335:0 BC016349:0 AK308998:0 AK307180:0 AK310987:0 ENST00000277540.6:-2 NM_138778:-2 uc004cnk.1:-2 AK075115:-2 CU675946:81 HQ448236:83 KJ895195:83 ENST00000460572.1:141 uc064xmj.1:141 ENST00000481839.5:309 uc064xmi.1:309 ENST00000470855.5:318 uc064xmh.1:318 |
TATA-Box annotation
| Distance to TSS: | 40 |
|---|---|
| Nearest PromoterID: | NM_001346371 |
| Entrez ID: | 92715 |
| Nearest Unigene: | Hs.292570 |
| Nearest Refseq: | NM_138778 |
| Nearest Ensembl: | ENSG00000148399 |
| Gene Name: | diphthamide biosynthesis 7 |
| Gene Alias: | C9orf112 |
| Gene Description: | diphthamide biosynthesis 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
