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Difference between revisions of "TSS:Hg 1034.1"

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(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=-146 |entrez_id=5081 |gc_percent=0.562189 |gene_alias=HUP1|PAX7B|RMS2 |gene_description=paired box 7 |gene_name=PAX7 |gene_type...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|PAX7B=
 +
|RMS2=
 +
|all_trans=ENST00000375375.7:125 NM_013945:125 NM_001135254:125 NM_002584:125 uc001bay.3:125 X96743:125
 +
|chr=chr1
 
|cpg_percent=0.055
 
|cpg_percent=0.055
 +
|distance=125
 
|distance_to_tss=-146
 
|distance_to_tss=-146
 +
|end=18630881
 
|entrez_id=5081
 
|entrez_id=5081
 
|gc_percent=0.562189
 
|gc_percent=0.562189
 
|gene_alias=HUP1|PAX7B|RMS2
 
|gene_alias=HUP1|PAX7B|RMS2
 
|gene_description=paired box 7
 
|gene_description=paired box 7
|gene_name=PAX7
+
|gene_id=5081
 +
|gene_name=paired box 7
 +
|gene_source=HGNC:8621
 +
|gene_symbol=PAX7
 +
|gene_synonyms=Hup1
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:8621
 
|nearest_ensembl=ENSG00000009709
 
|nearest_ensembl=ENSG00000009709
 
|nearest_promoter_id=NM_013945
 
|nearest_promoter_id=NM_013945
 
|nearest_refseq=NM_002584
 
|nearest_refseq=NM_002584
 
|nearest_unigene=Hs.113253
 
|nearest_unigene=Hs.113253
 +
|num_trans=6
 +
|species=human
 +
|start=18630839
 +
|strand=+
 +
|transcript_name=ENST00000375375.7 NM_013945 NM_001135254 NM_002584 uc001bay.3 X96743
 +
|tss_classification=yes
 
|tss_id=hg_1034.1
 
|tss_id=hg_1034.1
 +
|tss_score=1
 +
|uniprot_id=P23759
 
}}
 
}}

Revision as of 20:07, 8 March 2018

Basic information about the TSS


TSS ID:hg_1034.1
Species:human
Chr:chr1
TSS Classification:yes
Start:18630839
End:18630881
Strand:+
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation


Transcript_name:ENST00000375375.7 NM_013945 NM_001135254 NM_002584 uc001bay.3 X96743
Distance:125
GeneID:5081
HGNC/MGI_ID:HGNC:8621
UniProt_ID:P23759
Gene_name:paired box 7
Gene_symbol:PAX7
Gene_synonyms:Hup1
Gene_source:HGNC:8621



Transcript annotation


Transcript_name:ENST00000375375.7 NM_013945 NM_001135254 NM_002584 uc001bay.3 X96743
Distance:125
Num_trans:6
All_trans:ENST00000375375.7:125 NM_013945:125 NM_001135254:125 NM_002584:125 uc001bay.3:125 X96743:125



TATA-Box annotation


Distance to TSS:-146
Nearest PromoterID:NM_013945
Entrez ID:5081
Nearest Unigene:Hs.113253
Nearest Refseq:NM_002584
Nearest Ensembl:ENSG00000009709
Gene Name:paired box 7
Gene Alias:HUP1
Gene Description:paired box 7
Gene Type:protein-coding
CpG%:0.055
GC%:0.562189
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):