Difference between revisions of "TSS:Hg 103429.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=39 |entrez_id=23560 |gc_percent=0.636816 |gene_alias=CRFG|NGB|NOG1 |gene_description=GTP binding protein 4 |gene_name=GTPBP4 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NGB= | ||
| + | |NOG1= | ||
| + | |all_trans=ENST00000491635.1:0 uc057rer.1:0 BC008683:0 BC021243:0 AF120334:0 BC038975:0 AK097093:0 AK295231:0 AK001548:0 AK222861:0 KJ898511:6 AF325353:9 NM_012341:-17 AK001552:-17 BC033784:28 AK302219:30 ENST00000360059.5:235 uc057res.1:235 AK301721:244 ENST00000360803.8:-407 uc001ift.4:-407 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
| + | |end=988471 | ||
|entrez_id=23560 | |entrez_id=23560 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=CRFG|NGB|NOG1 | |gene_alias=CRFG|NGB|NOG1 | ||
|gene_description=GTP binding protein 4 | |gene_description=GTP binding protein 4 | ||
| − | |gene_name=GTPBP4 | + | |gene_id=23560 |
| + | |gene_name=GTP binding protein 4 | ||
| + | |gene_source=HGNC:21535 | ||
| + | |gene_symbol=GTPBP4 | ||
| + | |gene_synonyms=CRFG FLJ10686 FLJ10690 NGB NOG1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21535 | ||
|nearest_ensembl=ENSG00000107937 | |nearest_ensembl=ENSG00000107937 | ||
|nearest_promoter_id=NM_012341 | |nearest_promoter_id=NM_012341 | ||
|nearest_refseq=NM_012341 | |nearest_refseq=NM_012341 | ||
|nearest_unigene=Hs.215766 | |nearest_unigene=Hs.215766 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=988425 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000491635.1 uc057rer.1 BC008683 BC021243 AF120334 BC038975 AK097093 AK295231 AK001548 AK222861 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103429.1 | |tss_id=hg_103429.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DHR2 Q53GS0 | ||
}} | }} | ||
Revision as of 20:08, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000491635.1 uc057rer.1 BC008683 BC021243 AF120334 BC038975 AK097093 AK295231 AK001548 AK222861 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000491635.1:0 uc057rer.1:0 BC008683:0 BC021243:0 AF120334:0 BC038975:0 AK097093:0 AK295231:0 AK001548:0 AK222861:0 KJ898511:6 AF325353:9 NM_012341:-17 AK001552:-17 BC033784:28 AK302219:30 ENST00000360059.5:235 uc057res.1:235 AK301721:244 ENST00000360803.8:-407 uc001ift.4:-407 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_012341 |
| Entrez ID: | 23560 |
| Nearest Unigene: | Hs.215766 |
| Nearest Refseq: | NM_012341 |
| Nearest Ensembl: | ENSG00000107937 |
| Gene Name: | GTP binding protein 4 |
| Gene Alias: | CRFG |
| Gene Description: | GTP binding protein 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
