Difference between revisions of "TSS:Hg 103434.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=-197 |entrez_id=3422 |gc_percent=0.686567 |gene_alias=IPP1|IPPI1 |gene_description=isopentenyl-diphosphate delta isomerase 1 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |IPPI1= | ||
| + | |all_trans=BC018045:0 BC046483:0 BC050720:-2 ENST00000358220.5:437 uc031ptc.1:437 AB023199:437 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=-197 | |distance_to_tss=-197 | ||
| + | |end=1049101 | ||
|entrez_id=3422 | |entrez_id=3422 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_004508 | |nearest_refseq=NM_004508 | ||
|nearest_unigene=Hs.283652 | |nearest_unigene=Hs.283652 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=1049058 | ||
| + | |strand=+ | ||
|tata_box="60(GCGCCTTTAAGG,-,0.00),61(CGCCTTTAAGGG,-,0.00),62(GCCTTTAAGGGG,+,0.00),62(GCCTTTAAGGGG,-,0.00),63(CCTTTAAGGGGG,+,0.00)" | |tata_box="60(GCGCCTTTAAGG,-,0.00),61(CGCCTTTAAGGG,-,0.00),62(GCCTTTAAGGGG,+,0.00),62(GCCTTTAAGGGG,-,0.00),63(CCTTTAAGGGGG,+,0.00)" | ||
| + | |transcript_name=BC018045 BC046483 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103434.1 | |tss_id=hg_103434.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 20:09, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC018045 BC046483 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | BC018045:0 BC046483:0 BC050720:-2 ENST00000358220.5:437 uc031ptc.1:437 AB023199:437 |
TATA-Box annotation
| Distance to TSS: | -197 |
|---|---|
| Nearest PromoterID: | NM_001317957 |
| Entrez ID: | 3422 |
| Nearest Unigene: | Hs.283652 |
| Nearest Refseq: | NM_004508 |
| Nearest Ensembl: | ENSG00000067064 |
| Gene Name: | IDI1 |
| Gene Alias: | IPP1 |
| Gene Description: | isopentenyl-diphosphate delta isomerase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "60(GCGCCTTTAAGG,-,0.00),61(CGCCTTTAAGGG,-,0.00),62(GCCTTTAAGGGG,+,0.00),62(GCCTTTAAGGGG,-,0.00),63(CCTTTAAGGGGG,+,0.00)" |
