Difference between revisions of "TSS:Hg 103443.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=67 |entrez_id=399706 |gc_percent=0.656716 |gene_alias=C10orf139|NCRNA00200 |gene_description=long intergenic non-protein coding...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NCRNA00200= | ||
| + | |all_trans=AK097673:-3 BC133040:-11 ENST00000583117.1:-23 uc057rfe.1:-23 ENST00000425630.1:-59 NR_015376:-59 uc010qag.1:-59 BC133038:-59 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=-3 | ||
|distance_to_tss=67 | |distance_to_tss=67 | ||
| + | |end=1159844 | ||
|entrez_id=399706 | |entrez_id=399706 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=C10orf139|NCRNA00200 | |gene_alias=C10orf139|NCRNA00200 | ||
|gene_description=long intergenic non-protein coding RNA 200 | |gene_description=long intergenic non-protein coding RNA 200 | ||
| − | |gene_name=LINC00200 | + | |gene_id=399706 |
| + | |gene_name=long intergenic non-protein coding RNA 200 | ||
| + | |gene_source=HGNC:30974 | ||
| + | |gene_symbol=LINC00200 | ||
| + | |gene_synonyms=FLJ40354 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:30974 | ||
|nearest_ensembl=ENSG00000229205 | |nearest_ensembl=ENSG00000229205 | ||
|nearest_promoter_id=NR_015376 | |nearest_promoter_id=NR_015376 | ||
|nearest_refseq=NM_001010910 | |nearest_refseq=NM_001010910 | ||
|nearest_unigene=Hs.721191 | |nearest_unigene=Hs.721191 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=1159826 | ||
| + | |strand=+ | ||
| + | |transcript_name=AK097673 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103443.1 | |tss_id=hg_103443.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:09, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK097673 |
|---|---|
| Distance: | -3 |
| Num_trans: | 8 |
| All_trans: | AK097673:-3 BC133040:-11 ENST00000583117.1:-23 uc057rfe.1:-23 ENST00000425630.1:-59 NR_015376:-59 uc010qag.1:-59 BC133038:-59 |
TATA-Box annotation
| Distance to TSS: | 67 |
|---|---|
| Nearest PromoterID: | NR_015376 |
| Entrez ID: | 399706 |
| Nearest Unigene: | Hs.721191 |
| Nearest Refseq: | NM_001010910 |
| Nearest Ensembl: | ENSG00000229205 |
| Gene Name: | long intergenic non-protein coding RNA 200 |
| Gene Alias: | C10orf139 |
| Gene Description: | long intergenic non-protein coding RNA 200 |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
