Difference between revisions of "TSS:Hg 103632.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=-45 |entrez_id=114131 |gc_percent=0.542289 |gene_alias=SCP|SPC|UCNIII |gene_description=urocortin 3 |gene_name=UCN3 |gene_type=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SPC= | ||
| + | |UCNIII= | ||
| + | |all_trans=ENST00000380433.4:38 uc001ihx.2:38 NM_053049:42 BC100867:121 BC100868:121 BC100869:121 BC100870:121 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=38 | ||
|distance_to_tss=-45 | |distance_to_tss=-45 | ||
| + | |end=5364971 | ||
|entrez_id=114131 | |entrez_id=114131 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
|gene_alias=SCP|SPC|UCNIII | |gene_alias=SCP|SPC|UCNIII | ||
|gene_description=urocortin 3 | |gene_description=urocortin 3 | ||
| − | |gene_name=UCN3 | + | |gene_id=114131 |
| + | |gene_name=urocortin 3 | ||
| + | |gene_source=HGNC:17781 | ||
| + | |gene_symbol=UCN3 | ||
| + | |gene_synonyms=SPC UCNIII | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17781 | ||
|nearest_ensembl=ENSG00000178473 | |nearest_ensembl=ENSG00000178473 | ||
|nearest_promoter_id=NM_053049 | |nearest_promoter_id=NM_053049 | ||
|nearest_refseq=NM_053049 | |nearest_refseq=NM_053049 | ||
|nearest_unigene=Hs.511775 | |nearest_unigene=Hs.511775 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=5364957 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000380433.4 uc001ihx.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103632.1 | |tss_id=hg_103632.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q969E3 | ||
}} | }} | ||
Revision as of 20:17, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000380433.4 uc001ihx.2 |
|---|---|
| Distance: | 38 |
| Num_trans: | 7 |
| All_trans: | ENST00000380433.4:38 uc001ihx.2:38 NM_053049:42 BC100867:121 BC100868:121 BC100869:121 BC100870:121 |
TATA-Box annotation
| Distance to TSS: | -45 |
|---|---|
| Nearest PromoterID: | NM_053049 |
| Entrez ID: | 114131 |
| Nearest Unigene: | Hs.511775 |
| Nearest Refseq: | NM_053049 |
| Nearest Ensembl: | ENSG00000178473 |
| Gene Name: | urocortin 3 |
| Gene Alias: | SCP |
| Gene Description: | urocortin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
