Difference between revisions of "TSS:Hg 103642.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=60 |entrez_id=10276 |gc_percent=0.696517 |gene_alias=ARHGEF8|NET1A |gene_description=neuroepithelial cell transforming 1 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NET1A= | ||
| + | |all_trans=ENST00000486354.1:0 ENST00000449083.5:0 ENST00000380359.3:0 uc057rjj.1:0 uc057rjk.1:0 uc001iib.5:0 AK315566:0 AK294244:0 AK304028:0 AK024919:0 AJ010046:0 BC010285:0 NM_005863:-51 NR_073040:-51 CU679671:143 KJ898188:143 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=0 | ||
|distance_to_tss=60 | |distance_to_tss=60 | ||
| + | |end=5446621 | ||
|entrez_id=10276 | |entrez_id=10276 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=ARHGEF8|NET1A | |gene_alias=ARHGEF8|NET1A | ||
|gene_description=neuroepithelial cell transforming 1 | |gene_description=neuroepithelial cell transforming 1 | ||
| − | |gene_name=NET1 | + | |gene_id=10276 |
| + | |gene_name=neuroepithelial cell transforming 1 | ||
| + | |gene_source=HGNC:14592 | ||
| + | |gene_symbol=NET1 | ||
| + | |gene_synonyms=ARHGEF8 NET1A | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14592 | ||
|nearest_ensembl=ENSG00000173848 | |nearest_ensembl=ENSG00000173848 | ||
|nearest_promoter_id=NR_073040 | |nearest_promoter_id=NR_073040 | ||
|nearest_refseq=NM_005863 | |nearest_refseq=NM_005863 | ||
|nearest_unigene=Hs.25155 | |nearest_unigene=Hs.25155 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=5446601 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000486354.1 ENST00000449083.5 ENST00000380359.3 uc057rjj.1 uc057rjk.1 uc001iib.5 AK315566 AK294244 AK304028 AK024919 AJ010046 BC010285 | ||
| + | |tss_classification=no | ||
|tss_id=hg_103642.1 | |tss_id=hg_103642.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DFS9 B4E1Y1 Q5SQI6 Q7Z628 | ||
}} | }} | ||
Revision as of 20:18, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000486354.1 ENST00000449083.5 ENST00000380359.3 uc057rjj.1 uc057rjk.1 uc001iib.5 AK315566 AK294244 AK304028 AK024919 AJ010046 BC010285 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000486354.1:0 ENST00000449083.5:0 ENST00000380359.3:0 uc057rjj.1:0 uc057rjk.1:0 uc001iib.5:0 AK315566:0 AK294244:0 AK304028:0 AK024919:0 AJ010046:0 BC010285:0 NM_005863:-51 NR_073040:-51 CU679671:143 KJ898188:143 |
TATA-Box annotation
| Distance to TSS: | 60 |
|---|---|
| Nearest PromoterID: | NR_073040 |
| Entrez ID: | 10276 |
| Nearest Unigene: | Hs.25155 |
| Nearest Refseq: | NM_005863 |
| Nearest Ensembl: | ENSG00000173848 |
| Gene Name: | neuroepithelial cell transforming 1 |
| Gene Alias: | ARHGEF8 |
| Gene Description: | neuroepithelial cell transforming 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
