Difference between revisions of "TSS:Hg 103677.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=58 |entrez_id=84991 |gc_percent=0.80597 |gene_alias=SPF45 |gene_description=RNA binding motif protein 17 |gene_name=RBM17 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000437845.6:0 ENST00000432931.5:0 uc057rmi.1:0 uc057rmj.1:0 AF542550:0 AK314952:0 BC007871:0 ENST00000379888.8:-17 uc001ijb.4:-17 NM_032905:-18 ENST00000446108.5:262 NM_001145547:262 uc010qav.3:262 BC039322:262 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=0 | ||
|distance_to_tss=58 | |distance_to_tss=58 | ||
| + | |end=6089084 | ||
|entrez_id=84991 | |entrez_id=84991 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=SPF45 | |gene_alias=SPF45 | ||
|gene_description=RNA binding motif protein 17 | |gene_description=RNA binding motif protein 17 | ||
| − | |gene_name=RBM17 | + | |gene_id=84991 |
| + | |gene_name=RNA binding motif protein 17 | ||
| + | |gene_source=HGNC:16944 | ||
| + | |gene_symbol=RBM17 | ||
| + | |gene_synonyms=MGC14439 SPF45 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16944 | ||
|nearest_ensembl=ENSG00000134453 | |nearest_ensembl=ENSG00000134453 | ||
|nearest_promoter_id=NM_032905 | |nearest_promoter_id=NM_032905 | ||
|nearest_refseq=NM_032905 | |nearest_refseq=NM_032905 | ||
|nearest_unigene=Hs.498548 | |nearest_unigene=Hs.498548 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=6089003 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000437845.6 ENST00000432931.5 uc057rmi.1 uc057rmj.1 AF542550 AK314952 BC007871 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103677.1 | |tss_id=hg_103677.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5W010 Q5W012 | ||
}} | }} | ||
Revision as of 20:19, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000437845.6 ENST00000432931.5 uc057rmi.1 uc057rmj.1 AF542550 AK314952 BC007871 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000437845.6:0 ENST00000432931.5:0 uc057rmi.1:0 uc057rmj.1:0 AF542550:0 AK314952:0 BC007871:0 ENST00000379888.8:-17 uc001ijb.4:-17 NM_032905:-18 ENST00000446108.5:262 NM_001145547:262 uc010qav.3:262 BC039322:262 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_032905 |
| Entrez ID: | 84991 |
| Nearest Unigene: | Hs.498548 |
| Nearest Refseq: | NM_032905 |
| Nearest Ensembl: | ENSG00000134453 |
| Gene Name: | RNA binding motif protein 17 |
| Gene Alias: | SPF45 |
| Gene Description: | RNA binding motif protein 17 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
