Difference between revisions of "TSS:Hg 103710.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=26 |entrez_id=439949 |gc_percent=0.791045 |gene_alias=- |gene_description=PRKCQ antisense RNA 1 |gene_name=PRKCQ-AS1 |gene_type...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000455810.5:-18 NR_036503:-18 NR_036502:-18 uc021pmt.2:-18 ENST00000445427.1:-24 uc001ijl.4:-24 AY007155:80 ENST00000613651.1:152 uc057rnj.1:152 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=-18 | ||
|distance_to_tss=26 | |distance_to_tss=26 | ||
| + | |end=6580459 | ||
|entrez_id=439949 | |entrez_id=439949 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=PRKCQ antisense RNA 1 | |gene_description=PRKCQ antisense RNA 1 | ||
| − | |gene_name=PRKCQ-AS1 | + | |gene_id=439949 |
| + | |gene_name=PRKCQ antisense RNA 1 | ||
| + | |gene_source=HGNC:44689 | ||
| + | |gene_symbol=PRKCQ-AS1 | ||
| + | |gene_synonyms=ENST00000414894.1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44689 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_036502 | |nearest_promoter_id=NR_036502 | ||
|nearest_refseq=NR_036502 | |nearest_refseq=NR_036502 | ||
|nearest_unigene=Hs.13262 | |nearest_unigene=Hs.13262 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=6580442 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000455810.5 NR_036503 NR_036502 uc021pmt.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103710.1 | |tss_id=hg_103710.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000455810.5 NR_036503 NR_036502 uc021pmt.2 |
|---|---|
| Distance: | -18 |
| Num_trans: | 9 |
| All_trans: | ENST00000455810.5:-18 NR_036503:-18 NR_036502:-18 uc021pmt.2:-18 ENST00000445427.1:-24 uc001ijl.4:-24 AY007155:80 ENST00000613651.1:152 uc057rnj.1:152 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NR_036502 |
| Entrez ID: | 439949 |
| Nearest Unigene: | Hs.13262 |
| Nearest Refseq: | NR_036502 |
| Nearest Ensembl: | |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | PRKCQ antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.125 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
