Difference between revisions of "TSS:Hg 103768.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=71 |entrez_id=509 |gc_percent=0.656716 |gene_alias=ATP5C|ATP5CL1 |gene_description="ATP synthase, H+ transporting, mitochondria...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ATP5CL1= | ||
| + | |all_trans=ENST00000460362.5:0 ENST00000335698.4:0 ENST00000465936.5:0 ENST00000460820.6:0 uc057rpd.1:0 uc001ijv.4:0 uc057rpe.1:0 uc057rpf.1:0 BC020824:0 AK292896:0 AK296803:0 D16562:0 D16563:0 BC016812:0 AK129907:0 AK294061:0 BC010380:0 BC000470:1 BC013394:1 BC013865:3 ENST00000462760.1:-4 uc057rpc.1:-4 BC000931:-7 ENST00000493053.5:-16 uc057rpb.1:-16 CU677727:19 HQ448142:19 KJ890734:19 KJ896474:19 CR457403:20 ENST00000472202.1:22 uc057rpg.1:22 NM_005174:-33 NM_001001973:-33 ENST00000356708.11:-34 uc001iju.4:-34 BC026049:41 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=71 | |distance_to_tss=71 | ||
| + | |end=7788188 | ||
|entrez_id=509 | |entrez_id=509 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=ATP5C|ATP5CL1 | |gene_alias=ATP5C|ATP5CL1 | ||
|gene_description="ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" | |gene_description="ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" | ||
| − | |gene_name=ATP5C1 | + | |gene_id=509 |
| + | |gene_name="ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" | ||
| + | |gene_source=HGNC:833 | ||
| + | |gene_symbol=ATP5C1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:833 | ||
|nearest_ensembl=ENSG00000165629 | |nearest_ensembl=ENSG00000165629 | ||
|nearest_promoter_id=NM_001320886 | |nearest_promoter_id=NM_001320886 | ||
|nearest_refseq=NM_005174 | |nearest_refseq=NM_005174 | ||
|nearest_unigene=Hs.271135 | |nearest_unigene=Hs.271135 | ||
| + | |num_trans=37 | ||
| + | |species=human | ||
| + | |start=7788162 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000460362.5 ENST00000335698.4 ENST00000465936.5 ENST00000460820.6 uc057rpd.1 uc001ijv.4 uc057rpe.1 uc057rpf.1 BC020824 AK292896 AK296803 D16562 D16563 BC016812 AK129907 AK294061 BC010380 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103768.1 | |tss_id=hg_103768.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DFE6 B4DL14 P36542 | ||
}} | }} | ||
Revision as of 20:23, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000460362.5 ENST00000335698.4 ENST00000465936.5 ENST00000460820.6 uc057rpd.1 uc001ijv.4 uc057rpe.1 uc057rpf.1 BC020824 AK292896 AK296803 D16562 D16563 BC016812 AK129907 AK294061 BC010380 |
|---|---|
| Distance: | 0 |
| Num_trans: | 37 |
| All_trans: | ENST00000460362.5:0 ENST00000335698.4:0 ENST00000465936.5:0 ENST00000460820.6:0 uc057rpd.1:0 uc001ijv.4:0 uc057rpe.1:0 uc057rpf.1:0 BC020824:0 AK292896:0 AK296803:0 D16562:0 D16563:0 BC016812:0 AK129907:0 AK294061:0 BC010380:0 BC000470:1 BC013394:1 BC013865:3 ENST00000462760.1:-4 uc057rpc.1:-4 BC000931:-7 ENST00000493053.5:-16 uc057rpb.1:-16 CU677727:19 HQ448142:19 KJ890734:19 KJ896474:19 CR457403:20 ENST00000472202.1:22 uc057rpg.1:22 NM_005174:-33 NM_001001973:-33 ENST00000356708.11:-34 uc001iju.4:-34 BC026049:41 |
TATA-Box annotation
| Distance to TSS: | 71 |
|---|---|
| Nearest PromoterID: | NM_001320886 |
| Entrez ID: | 509 |
| Nearest Unigene: | Hs.271135 |
| Nearest Refseq: | NM_005174 |
| Nearest Ensembl: | ENSG00000165629 |
| Gene Name: | "ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" |
| Gene Alias: | ATP5C |
| Gene Description: | "ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
