Difference between revisions of "TSS:Hg 103793.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=597 |entrez_id=2625 |gc_percent=0.646766 |gene_alias=HDR|HDRS |gene_description=GATA binding protein 3 |gene_name=GATA3 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HDRS= | ||
| + | |all_trans=X55122:149 X58072:198 X55037:223 M69106:228 AB463676:347 AM392571:348 AM392688:348 CU678358:349 KJ905755:349 KJ896866:350 AK298213:-481 BC003070:-486 ENST00000346208.3:-490 uc001ika.4:-490 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=149 | ||
|distance_to_tss=597 | |distance_to_tss=597 | ||
| + | |end=8055306 | ||
|entrez_id=2625 | |entrez_id=2625 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=HDR|HDRS | |gene_alias=HDR|HDRS | ||
|gene_description=GATA binding protein 3 | |gene_description=GATA binding protein 3 | ||
| − | |gene_name=GATA3 | + | |gene_id=2625 |
| + | |gene_name=GATA binding protein 3 | ||
| + | |gene_source=HGNC:4172 | ||
| + | |gene_symbol=GATA3 | ||
| + | |gene_synonyms=HDR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4172 | ||
|nearest_ensembl=ENSG00000107485 | |nearest_ensembl=ENSG00000107485 | ||
|nearest_promoter_id=NM_001002295 | |nearest_promoter_id=NM_001002295 | ||
|nearest_refseq=NM_002051 | |nearest_refseq=NM_002051 | ||
|nearest_unigene=Hs.524134 | |nearest_unigene=Hs.524134 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=8055295 | ||
| + | |strand=+ | ||
| + | |transcript_name=X55122 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103793.1 | |tss_id=hg_103793.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:24, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | X55122 |
|---|---|
| Distance: | 149 |
| Num_trans: | 14 |
| All_trans: | X55122:149 X58072:198 X55037:223 M69106:228 AB463676:347 AM392571:348 AM392688:348 CU678358:349 KJ905755:349 KJ896866:350 AK298213:-481 BC003070:-486 ENST00000346208.3:-490 uc001ika.4:-490 |
TATA-Box annotation
| Distance to TSS: | 597 |
|---|---|
| Nearest PromoterID: | NM_001002295 |
| Entrez ID: | 2625 |
| Nearest Unigene: | Hs.524134 |
| Nearest Refseq: | NM_002051 |
| Nearest Ensembl: | ENSG00000107485 |
| Gene Name: | GATA binding protein 3 |
| Gene Alias: | HDR |
| Gene Description: | GATA binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
