Difference between revisions of "TSS:Hg 103861.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=99 |entrez_id=10659 |gc_percent=0.606965 |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |gene_description="CUGBP, E...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CELF-2= | ||
| + | |CUG-BP2= | ||
| + | |CUGBP2= | ||
| + | |ETR-3= | ||
| + | |ETR3= | ||
| + | |NAPOR= | ||
| + | |all_trans=ENST00000608830.5:8 uc031vxe.2:8 AK293164:8 AF036956:-12 AK299992:-29 AK297313:-35 AF432906:46 ENST00000399850.7:-96 ENST00000417956.6:-96 NM_001025076:-96 NM_001083591:-96 uc057rqu.1:-96 uc031vxf.2:-96 AK316354:146 AK299983:-160 AK304216:324 ENST00000609870.5:352 ENST00000609692.5:352 uc057rqv.1:352 uc057rqw.1:352 AK310038:352 AK302681:352 ENST00000354897.3:354 uc057rqx.1:354 AK295511:396 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=8 | ||
|distance_to_tss=99 | |distance_to_tss=99 | ||
| + | |end=11165132 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | ||
|gene_description="CUGBP, Elav-like family member 2" | |gene_description="CUGBP, Elav-like family member 2" | ||
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name="CUGBP, Elav-like family member 2" | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
|nearest_promoter_id=NM_001083591 | |nearest_promoter_id=NM_001083591 | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=11165125 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000608830.5 uc031vxe.2 AK293164 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103861.1 | |tss_id=hg_103861.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DDE7 O95319 | ||
}} | }} | ||
Revision as of 20:27, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000608830.5 uc031vxe.2 AK293164 |
|---|---|
| Distance: | 8 |
| Num_trans: | 25 |
| All_trans: | ENST00000608830.5:8 uc031vxe.2:8 AK293164:8 AF036956:-12 AK299992:-29 AK297313:-35 AF432906:46 ENST00000399850.7:-96 ENST00000417956.6:-96 NM_001025076:-96 NM_001083591:-96 uc057rqu.1:-96 uc031vxf.2:-96 AK316354:146 AK299983:-160 AK304216:324 ENST00000609870.5:352 ENST00000609692.5:352 uc057rqv.1:352 uc057rqw.1:352 AK310038:352 AK302681:352 ENST00000354897.3:354 uc057rqx.1:354 AK295511:396 |
TATA-Box annotation
| Distance to TSS: | 99 |
|---|---|
| Nearest PromoterID: | NM_001083591 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | "CUGBP, Elav-like family member 2" |
| Gene Alias: | BRUNOL3 |
| Gene Description: | "CUGBP, Elav-like family member 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
