Difference between revisions of "TSS:Hg 103868.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.05 |distance_to_tss=454 |entrez_id=10659 |gc_percent=0.557214 |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |gene_description="CUGBP, E...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CELF-2= | ||
| + | |CUG-BP2= | ||
| + | |CUGBP2= | ||
| + | |ETR-3= | ||
| + | |ETR3= | ||
| + | |NAPOR= | ||
| + | |all_trans=ENST00000609870.5:0 ENST00000609692.5:0 ENST00000354897.3:0 uc057rqv.1:0 uc057rqw.1:0 uc057rqx.1:0 AK310038:0 AK302681:0 AK304216:-20 AK295511:36 AK316354:-198 AF432906:-298 ENST00000608830.5:-336 uc031vxe.2:-336 AK293164:-336 AF036956:-362 AK299992:-379 AK297313:-385 ENST00000399850.7:-446 ENST00000417956.6:-446 NM_001025076:-446 NM_001083591:-446 uc057rqu.1:-446 uc031vxf.2:-446 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| + | |distance=0 | ||
|distance_to_tss=454 | |distance_to_tss=454 | ||
| + | |end=11165492 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
|gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | |gene_alias=BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR | ||
|gene_description="CUGBP, Elav-like family member 2" | |gene_description="CUGBP, Elav-like family member 2" | ||
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name="CUGBP, Elav-like family member 2" | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
|nearest_promoter_id=NM_001083591 | |nearest_promoter_id=NM_001083591 | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=11165475 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000609870.5 ENST00000609692.5 ENST00000354897.3 uc057rqv.1 uc057rqw.1 uc057rqx.1 AK310038 AK302681 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103868.1 | |tss_id=hg_103868.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DZ01 Q5VZZ6 V9GY47 V9GYD9 | ||
}} | }} | ||
Revision as of 20:27, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000609870.5 ENST00000609692.5 ENST00000354897.3 uc057rqv.1 uc057rqw.1 uc057rqx.1 AK310038 AK302681 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENST00000609870.5:0 ENST00000609692.5:0 ENST00000354897.3:0 uc057rqv.1:0 uc057rqw.1:0 uc057rqx.1:0 AK310038:0 AK302681:0 AK304216:-20 AK295511:36 AK316354:-198 AF432906:-298 ENST00000608830.5:-336 uc031vxe.2:-336 AK293164:-336 AF036956:-362 AK299992:-379 AK297313:-385 ENST00000399850.7:-446 ENST00000417956.6:-446 NM_001025076:-446 NM_001083591:-446 uc057rqu.1:-446 uc031vxf.2:-446 |
TATA-Box annotation
| Distance to TSS: | 454 |
|---|---|
| Nearest PromoterID: | NM_001083591 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | "CUGBP, Elav-like family member 2" |
| Gene Alias: | BRUNOL3 |
| Gene Description: | "CUGBP, Elav-like family member 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
