Difference between revisions of "TSS:Hg 1039.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=570 |entrez_id=5081 |gc_percent=0.597015 |gene_alias=HUP1|PAX7B|RMS2 |gene_description=paired box 7 |gene_name=PAX7 |gene_type=pr...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PAX7B= | ||
| + | |RMS2= | ||
| + | |all_trans=KJ897296:17 ENST00000400661.3:-42 uc001baz.4:-42 BC121165:-42 BC121166:-42 ENST00000420770.6:-45 uc010oct.3:-45 DQ322591:-45 Z35141:-64 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=17 | ||
|distance_to_tss=570 | |distance_to_tss=570 | ||
| + | |end=18631587 | ||
|entrez_id=5081 | |entrez_id=5081 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_002584 | |nearest_refseq=NM_002584 | ||
|nearest_unigene=Hs.113253 | |nearest_unigene=Hs.113253 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=18631565 | ||
| + | |strand=+ | ||
| + | |transcript_name=KJ897296 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1039.1 | |tss_id=hg_1039.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 20:29, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | KJ897296 |
|---|---|
| Distance: | 17 |
| Num_trans: | 9 |
| All_trans: | KJ897296:17 ENST00000400661.3:-42 uc001baz.4:-42 BC121165:-42 BC121166:-42 ENST00000420770.6:-45 uc010oct.3:-45 DQ322591:-45 Z35141:-64 |
TATA-Box annotation
| Distance to TSS: | 570 |
|---|---|
| Nearest PromoterID: | NM_002584 |
| Entrez ID: | 5081 |
| Nearest Unigene: | Hs.113253 |
| Nearest Refseq: | NM_002584 |
| Nearest Ensembl: | ENSG00000009709 |
| Gene Name: | PAX7 |
| Gene Alias: | HUP1 |
| Gene Description: | paired box 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
