Difference between revisions of "TSS:Hg 103902.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.195 |distance_to_tss=-72 |entrez_id=254427 |gc_percent=0.79602 |gene_alias=C10orf47 |gene_description=proline and serine rich 2 |gene_name=PROSER2 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000474155.1:6 uc057rrk.1:6 ENST00000622831.4:65 ENST00000277570.9:65 NM_153256:65 uc057rrl.1:65 uc001ikx.3:65 BC017269:65 BC048800:65 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.195 | |cpg_percent=0.195 | ||
| + | |distance=6 | ||
|distance_to_tss=-72 | |distance_to_tss=-72 | ||
| + | |end=11823333 | ||
|entrez_id=254427 | |entrez_id=254427 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
|gene_alias=C10orf47 | |gene_alias=C10orf47 | ||
|gene_description=proline and serine rich 2 | |gene_description=proline and serine rich 2 | ||
| − | |gene_name=PROSER2 | + | |gene_id=254427 |
| + | |gene_name=proline and serine rich 2 | ||
| + | |gene_source=HGNC:23728 | ||
| + | |gene_symbol=PROSER2 | ||
| + | |gene_synonyms=MGC35403 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23728 | ||
|nearest_ensembl=ENSG00000148426 | |nearest_ensembl=ENSG00000148426 | ||
|nearest_promoter_id=NM_153256 | |nearest_promoter_id=NM_153256 | ||
|nearest_refseq=NM_153256 | |nearest_refseq=NM_153256 | ||
|nearest_unigene=Hs.435775 | |nearest_unigene=Hs.435775 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=11823318 | ||
| + | |strand=+ | ||
|tata_box="-77(GGCCCTTTAAGC,-,0.00),-75(CCCTTTAAGCGC,+,0.00)" | |tata_box="-77(GGCCCTTTAAGC,-,0.00),-75(CCCTTTAAGCGC,+,0.00)" | ||
| + | |transcript_name=ENST00000474155.1 uc057rrk.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103902.1 | |tss_id=hg_103902.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:29, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000474155.1 uc057rrk.1 |
|---|---|
| Distance: | 6 |
| Num_trans: | 9 |
| All_trans: | ENST00000474155.1:6 uc057rrk.1:6 ENST00000622831.4:65 ENST00000277570.9:65 NM_153256:65 uc057rrl.1:65 uc001ikx.3:65 BC017269:65 BC048800:65 |
TATA-Box annotation
| Distance to TSS: | -72 |
|---|---|
| Nearest PromoterID: | NM_153256 |
| Entrez ID: | 254427 |
| Nearest Unigene: | Hs.435775 |
| Nearest Refseq: | NM_153256 |
| Nearest Ensembl: | ENSG00000148426 |
| Gene Name: | proline and serine rich 2 |
| Gene Alias: | C10orf47 |
| Gene Description: | proline and serine rich 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.195 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-77(GGCCCTTTAAGC,-,0.00),-75(CCCTTTAAGCGC,+,0.00)" |
