Difference between revisions of "TSS:Hg 103910.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-26191 |entrez_id=100616488 |gc_percent=0.422886 |gene_alias=- |gene_description=microRNA 548ak |gene_name=MIR548AK |gene_type=n...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000466451.1:0 uc057rsh.1:0 AK001440:-79 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=0 | ||
|distance_to_tss=-26191 | |distance_to_tss=-26191 | ||
| + | |end=12157026 | ||
|entrez_id=100616488 | |entrez_id=100616488 | ||
|gc_percent=0.422886 | |gc_percent=0.422886 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=microRNA 548ak | |gene_description=microRNA 548ak | ||
| − | |gene_name= | + | |gene_id=55176 |
| + | |gene_name=Sec61 translocon alpha 2 subunit | ||
| + | |gene_source=HGNC:17702 | ||
| + | |gene_symbol=SEC61A2 | ||
| + | |gene_synonyms=FLJ10578 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:17702 | ||
|nearest_ensembl=ENSG00000265653 | |nearest_ensembl=ENSG00000265653 | ||
|nearest_promoter_id=NR_039699 | |nearest_promoter_id=NR_039699 | ||
|nearest_refseq=NR_039699 | |nearest_refseq=NR_039699 | ||
|nearest_unigene= | |nearest_unigene= | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=12156987 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000466451.1 uc057rsh.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_103910.1 | |tss_id=hg_103910.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:29, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000466451.1 uc057rsh.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 3 |
| All_trans: | ENST00000466451.1:0 uc057rsh.1:0 AK001440:-79 |
TATA-Box annotation
| Distance to TSS: | -26191 |
|---|---|
| Nearest PromoterID: | NR_039699 |
| Entrez ID: | 100616488 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_039699 |
| Nearest Ensembl: | ENSG00000265653 |
| Gene Name: | Sec61 translocon alpha 2 subunit |
| Gene Alias: | - |
| Gene Description: | microRNA 548ak |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.422886 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
