Difference between revisions of "TSS:Hg 103940.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=9111 |entrez_id=10133 |gc_percent=0.562189 |gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP |gene_description=optineurin...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FIP2= | ||
| + | |GLC1E= | ||
| + | |HIP7= | ||
| + | |HYPL= | ||
| + | |NRP= | ||
| + | |TFIIIA-INTP= | ||
| + | |all_trans=AB385568:-54 DQ895820:-54 DQ893651:-54 KU178502:-54 KU178503:-54 KU178504:-54 CU689526:-58 KJ892931:-58 KJ902062:-58 KR710295:-58 KR710296:-58 KR710297:-58 KR710298:-58 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-54 | ||
|distance_to_tss=9111 | |distance_to_tss=9111 | ||
| + | |end=13109210 | ||
|entrez_id=10133 | |entrez_id=10133 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
|gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP | |gene_alias=ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP | ||
|gene_description=optineurin | |gene_description=optineurin | ||
| − | |gene_name=OPTN | + | |gene_id=10133 |
| + | |gene_name=optineurin | ||
| + | |gene_source=HGNC:17142 | ||
| + | |gene_symbol=OPTN | ||
| + | |gene_synonyms=FIP-2 FIP2 HIP7 HYPL NRP TFIIIA-INTP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17142 | ||
|nearest_ensembl=ENSG00000123240 | |nearest_ensembl=ENSG00000123240 | ||
|nearest_promoter_id=NM_001008211 | |nearest_promoter_id=NM_001008211 | ||
|nearest_refseq=NM_021980 | |nearest_refseq=NM_021980 | ||
|nearest_unigene=Hs.332706 | |nearest_unigene=Hs.332706 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=13109176 | ||
| + | |strand=+ | ||
| + | |transcript_name=AB385568 DQ895820 DQ893651 KU178502 KU178503 KU178504 | ||
| + | |tss_classification=no | ||
|tss_id=hg_103940.1 | |tss_id=hg_103940.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0S2Z500 A0A0S2Z5I6 | ||
}} | }} | ||
Revision as of 20:31, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB385568 DQ895820 DQ893651 KU178502 KU178503 KU178504 |
|---|---|
| Distance: | -54 |
| Num_trans: | 13 |
| All_trans: | AB385568:-54 DQ895820:-54 DQ893651:-54 KU178502:-54 KU178503:-54 KU178504:-54 CU689526:-58 KJ892931:-58 KJ902062:-58 KR710295:-58 KR710296:-58 KR710297:-58 KR710298:-58 |
TATA-Box annotation
| Distance to TSS: | 9111 |
|---|---|
| Nearest PromoterID: | NM_001008211 |
| Entrez ID: | 10133 |
| Nearest Unigene: | Hs.332706 |
| Nearest Refseq: | NM_021980 |
| Nearest Ensembl: | ENSG00000123240 |
| Gene Name: | optineurin |
| Gene Alias: | ALS12 |
| Gene Description: | optineurin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
