Difference between revisions of "TSS:Hg 103992.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=-101 |entrez_id=644890 |gc_percent=0.661692 |gene_alias=SPATA39|bA2K17.3 |gene_description=meiosis/spermiogenesis associated 1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000477770.5:94 ENST00000407572.5:94 NM_001080836:94 uc009xjk.1:94 uc057ryz.1:94 ENST00000496225.2:165 uc057rza.1:165 | ||
| + | |bA2K17.3= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=94 | ||
|distance_to_tss=-101 | |distance_to_tss=-101 | ||
| + | |end=14959345 | ||
|entrez_id=644890 | |entrez_id=644890 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=SPATA39|bA2K17.3 | |gene_alias=SPATA39|bA2K17.3 | ||
|gene_description=meiosis/spermiogenesis associated 1 | |gene_description=meiosis/spermiogenesis associated 1 | ||
| − | |gene_name=MEIG1 | + | |gene_id=644890 |
| + | |gene_name=meiosis/spermiogenesis associated 1 | ||
| + | |gene_source=HGNC:23429 | ||
| + | |gene_symbol=MEIG1 | ||
| + | |gene_synonyms=SPATA39 bA2K17.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23429 | ||
|nearest_ensembl=ENSG00000197889 | |nearest_ensembl=ENSG00000197889 | ||
|nearest_promoter_id=NM_001080836 | |nearest_promoter_id=NM_001080836 | ||
|nearest_refseq=NM_001080836 | |nearest_refseq=NM_001080836 | ||
|nearest_unigene=Hs.257249 | |nearest_unigene=Hs.257249 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=14959330 | ||
| + | |strand=+ | ||
|tata_box="-38(GCGCATAAAAGC,-,0.00)" | |tata_box="-38(GCGCATAAAAGC,-,0.00)" | ||
| + | |transcript_name=ENST00000477770.5 ENST00000407572.5 NM_001080836 uc009xjk.1 uc057ryz.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103992.1 | |tss_id=hg_103992.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JSS6 | ||
}} | }} | ||
Revision as of 20:33, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000477770.5 ENST00000407572.5 NM_001080836 uc009xjk.1 uc057ryz.1 |
|---|---|
| Distance: | 94 |
| Num_trans: | 7 |
| All_trans: | ENST00000477770.5:94 ENST00000407572.5:94 NM_001080836:94 uc009xjk.1:94 uc057ryz.1:94 ENST00000496225.2:165 uc057rza.1:165 |
TATA-Box annotation
| Distance to TSS: | -101 |
|---|---|
| Nearest PromoterID: | NM_001080836 |
| Entrez ID: | 644890 |
| Nearest Unigene: | Hs.257249 |
| Nearest Refseq: | NM_001080836 |
| Nearest Ensembl: | ENSG00000197889 |
| Gene Name: | meiosis/spermiogenesis associated 1 |
| Gene Alias: | SPATA39 |
| Gene Description: | meiosis/spermiogenesis associated 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-38(GCGCATAAAAGC,-,0.00)" |
