Difference between revisions of "TSS:Hg 10400.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-1013 |entrez_id=9249 |gc_percent=0.547264 |gene_alias=DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 |gene_description=dehydrogenase/...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |RDH17= | ||
| + | |Rsdr1= | ||
| + | |SDR1= | ||
| + | |SDR16C1= | ||
| + | |all_trans=ENST00000606790.1:-497 uc057ckb.1:-497 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=-497 | ||
|distance_to_tss=-1013 | |distance_to_tss=-1013 | ||
| + | |end=12618747 | ||
|entrez_id=9249 | |entrez_id=9249 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| Line 12: | Line 20: | ||
|nearest_refseq=NM_004753 | |nearest_refseq=NM_004753 | ||
|nearest_unigene=Hs.289347 | |nearest_unigene=Hs.289347 | ||
| + | |num_trans=2 | ||
| + | |retSDR1= | ||
| + | |species=human | ||
| + | |start=12618740 | ||
| + | |strand=- | ||
|tata_box="-33(GGCTTTTAAAAG,-,0.00),-32(GCTTTTAAAAGT,+,0.00),-31(CTTTTAAAAGTC,+,0.00)" | |tata_box="-33(GGCTTTTAAAAG,-,0.00),-32(GCTTTTAAAAGT,+,0.00),-31(CTTTTAAAAGTC,+,0.00)" | ||
| + | |transcript_name=ENST00000606790.1 uc057ckb.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_10400.1 | |tss_id=hg_10400.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 20:33, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000606790.1 uc057ckb.1 |
|---|---|
| Distance: | -497 |
| Num_trans: | 2 |
| All_trans: | ENST00000606790.1:-497 uc057ckb.1:-497 |
TATA-Box annotation
| Distance to TSS: | -1013 |
|---|---|
| Nearest PromoterID: | NM_004753 |
| Entrez ID: | 9249 |
| Nearest Unigene: | Hs.289347 |
| Nearest Refseq: | NM_004753 |
| Nearest Ensembl: | ENSG00000162496 |
| Gene Name: | DHRS3 |
| Gene Alias: | DD83.1 |
| Gene Description: | dehydrogenase/reductase 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GGCTTTTAAAAG,-,0.00),-32(GCTTTTAAAAGT,+,0.00),-31(CTTTTAAAAGTC,+,0.00)" |
