Difference between revisions of "TSS:Hg 104001.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=10 |entrez_id=10557 |gc_percent=0.661692 |gene_alias=- |gene_description=ribonuclease P/MRP subunit p38 |gene_name=RPP38 |gene_ty...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000378203.5:0 ENST00000616640.1:0 NM_183005:0 NM_001097590:0 NM_006414:0 NM_001265601:0 uc009xjm.5:0 uc031pth.2:0 AK223418:0 ENST00000378201.6:12 uc057rzk.1:12 ENST00000451677.1:34 uc057rzl.1:34 ENST00000378202.5:128 uc001inx.6:128 ENST00000378197.4:179 uc001iny.6:179 AK057006:179 U77664:182 BC029494:196 ENST00000441850.1:217 uc057rzm.1:217 AF079567:421 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=10 | |distance_to_tss=10 | ||
| + | |end=15097203 | ||
|entrez_id=10557 | |entrez_id=10557 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=ribonuclease P/MRP subunit p38 | |gene_description=ribonuclease P/MRP subunit p38 | ||
| − | |gene_name=RPP38 | + | |gene_id=10557 |
| + | |gene_name=ribonuclease P/MRP 38kDa subunit | ||
| + | |gene_source=HGNC:30329 | ||
| + | |gene_symbol=RPP38 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30329 | ||
|nearest_ensembl=ENSG00000152464 | |nearest_ensembl=ENSG00000152464 | ||
|nearest_promoter_id=NM_001265601 | |nearest_promoter_id=NM_001265601 | ||
|nearest_refseq=NM_006414 | |nearest_refseq=NM_006414 | ||
|nearest_unigene=Hs.94986 | |nearest_unigene=Hs.94986 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=15097177 | ||
| + | |strand=+ | ||
|tata_box="-28(GAGTCTAAAAGA,-,0.00)" | |tata_box="-28(GAGTCTAAAAGA,-,0.00)" | ||
| + | |transcript_name=ENST00000378203.5 ENST00000616640.1 NM_183005 NM_001097590 NM_006414 NM_001265601 uc009xjm.5 uc031pth.2 AK223418 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104001.1 | |tss_id=hg_104001.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P78345 | ||
}} | }} | ||
Revision as of 20:33, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000378203.5 ENST00000616640.1 NM_183005 NM_001097590 NM_006414 NM_001265601 uc009xjm.5 uc031pth.2 AK223418 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000378203.5:0 ENST00000616640.1:0 NM_183005:0 NM_001097590:0 NM_006414:0 NM_001265601:0 uc009xjm.5:0 uc031pth.2:0 AK223418:0 ENST00000378201.6:12 uc057rzk.1:12 ENST00000451677.1:34 uc057rzl.1:34 ENST00000378202.5:128 uc001inx.6:128 ENST00000378197.4:179 uc001iny.6:179 AK057006:179 U77664:182 BC029494:196 ENST00000441850.1:217 uc057rzm.1:217 AF079567:421 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001265601 |
| Entrez ID: | 10557 |
| Nearest Unigene: | Hs.94986 |
| Nearest Refseq: | NM_006414 |
| Nearest Ensembl: | ENSG00000152464 |
| Gene Name: | ribonuclease P/MRP 38kDa subunit |
| Gene Alias: | - |
| Gene Description: | ribonuclease P/MRP subunit p38 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-28(GAGTCTAAAAGA,-,0.00)" |
