Difference between revisions of "TSS:Hg 104113.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=-348 |entrez_id=783 |gc_percent=0.721393 |gene_alias=CACNLB2|CAVB2|MYSB |gene_description=calcium voltage-gated channel auxiliar...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CAVB2= | ||
| + | |MYSB= | ||
| + | |all_trans=ENST00000324631.11:340 NM_201596:340 NM_201593:340 NM_201597:340 uc001ipr.3:340 S60415:340 BC136409:377 KJ896530:398 AF137376:399 ENST00000352115.10:400 ENST00000377328.5:400 uc001ips.3:400 uc009xjz.2:400 AF423191:400 AY393860:400 AY675091:400 ENST00000468177.1:410 uc057sbx.1:410 AK296471:433 ENST00000467034.1:455 uc057sby.1:455 AK311694:455 NM_001167945:476 NM_201571:476 NM_201572:476 AK307526:476 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=340 | ||
|distance_to_tss=-348 | |distance_to_tss=-348 | ||
| + | |end=18140337 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=CACNLB2|CAVB2|MYSB | |gene_alias=CACNLB2|CAVB2|MYSB | ||
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| − | |gene_name=CACNB2 | + | |gene_id=783 |
| + | |gene_name=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| + | |gene_source=HGNC:1402 | ||
| + | |gene_symbol=CACNB2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1402 | ||
|nearest_ensembl=ENSG00000165995 | |nearest_ensembl=ENSG00000165995 | ||
|nearest_promoter_id=NM_201596 | |nearest_promoter_id=NM_201596 | ||
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| + | |num_trans=26 | ||
| + | |species=human | ||
| + | |start=18140321 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000324631.11 NM_201596 NM_201593 NM_201597 uc001ipr.3 S60415 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104113.1 | |tss_id=hg_104113.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q08289 | ||
}} | }} | ||
Revision as of 20:38, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000324631.11 NM_201596 NM_201593 NM_201597 uc001ipr.3 S60415 |
|---|---|
| Distance: | 340 |
| Num_trans: | 26 |
| All_trans: | ENST00000324631.11:340 NM_201596:340 NM_201593:340 NM_201597:340 uc001ipr.3:340 S60415:340 BC136409:377 KJ896530:398 AF137376:399 ENST00000352115.10:400 ENST00000377328.5:400 uc001ips.3:400 uc009xjz.2:400 AF423191:400 AY393860:400 AY675091:400 ENST00000468177.1:410 uc057sbx.1:410 AK296471:433 ENST00000467034.1:455 uc057sby.1:455 AK311694:455 NM_001167945:476 NM_201571:476 NM_201572:476 AK307526:476 |
TATA-Box annotation
| Distance to TSS: | -348 |
|---|---|
| Nearest PromoterID: | NM_201596 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | CACNLB2 |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
