Difference between revisions of "TSS:Hg 104118.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=-37 |entrez_id=783 |gc_percent=0.706468 |gene_alias=CACNLB2|CAVB2|MYSB |gene_description=calcium voltage-gated channel auxiliar...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CAVB2= | ||
| + | |MYSB= | ||
| + | |all_trans=ENST00000468177.1:0 ENST00000467034.1:0 uc057sbx.1:0 uc057sby.1:0 AK296471:0 AK311694:0 NM_001167945:3 NM_201571:3 NM_201572:3 AK307526:3 ENST00000352115.10:-6 ENST00000377328.5:-6 uc001ips.3:-6 uc009xjz.2:-6 AF423191:-6 AY393860:-6 AY675091:-6 AF137376:-7 KJ896530:-8 BC136409:-29 ENST00000324631.11:-66 NM_201596:-66 NM_201593:-66 NM_201597:-66 uc001ipr.3:-66 S60415:-66 AK293837:71 ENST00000282343.12:148 uc001ipu.4:148 ENST00000377331.6:370 uc001ipv.4:370 AF423190:370 AY393858:370 AY393861:370 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=-37 | |distance_to_tss=-37 | ||
| + | |end=18140810 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=CACNLB2|CAVB2|MYSB | |gene_alias=CACNLB2|CAVB2|MYSB | ||
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| − | |gene_name=CACNB2 | + | |gene_id=783 |
| + | |gene_name=calcium voltage-gated channel auxiliary subunit beta 2 | ||
| + | |gene_source=HGNC:1402 | ||
| + | |gene_symbol=CACNB2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1402 | ||
|nearest_ensembl=ENSG00000165995 | |nearest_ensembl=ENSG00000165995 | ||
|nearest_promoter_id=NM_201571 | |nearest_promoter_id=NM_201571 | ||
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| + | |num_trans=34 | ||
| + | |species=human | ||
| + | |start=18140742 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000468177.1 ENST00000467034.1 uc057sbx.1 uc057sby.1 AK296471 AK311694 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104118.1 | |tss_id=hg_104118.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z3Y0 | ||
}} | }} | ||
Revision as of 20:38, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000468177.1 ENST00000467034.1 uc057sbx.1 uc057sby.1 AK296471 AK311694 |
|---|---|
| Distance: | 0 |
| Num_trans: | 34 |
| All_trans: | ENST00000468177.1:0 ENST00000467034.1:0 uc057sbx.1:0 uc057sby.1:0 AK296471:0 AK311694:0 NM_001167945:3 NM_201571:3 NM_201572:3 AK307526:3 ENST00000352115.10:-6 ENST00000377328.5:-6 uc001ips.3:-6 uc009xjz.2:-6 AF423191:-6 AY393860:-6 AY675091:-6 AF137376:-7 KJ896530:-8 BC136409:-29 ENST00000324631.11:-66 NM_201596:-66 NM_201593:-66 NM_201597:-66 uc001ipr.3:-66 S60415:-66 AK293837:71 ENST00000282343.12:148 uc001ipu.4:148 ENST00000377331.6:370 uc001ipv.4:370 AF423190:370 AY393858:370 AY393861:370 |
TATA-Box annotation
| Distance to TSS: | -37 |
|---|---|
| Nearest PromoterID: | NM_201571 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | CACNLB2 |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
