Difference between revisions of "TSS:Hg 104186.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=326856 |entrez_id=84898 |gc_percent=0.328358 |gene_alias=TEM7R |gene_description=plexin domain containing 2 |gene_name=PLXDC2 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK027529:99 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=99 | ||
|distance_to_tss=326856 | |distance_to_tss=326856 | ||
| + | |end=20143305 | ||
|entrez_id=84898 | |entrez_id=84898 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
|gene_alias=TEM7R | |gene_alias=TEM7R | ||
|gene_description=plexin domain containing 2 | |gene_description=plexin domain containing 2 | ||
| − | |gene_name=PLXDC2 | + | |gene_id=84898 |
| + | |gene_name=plexin domain containing 2 | ||
| + | |gene_source=HGNC:21013 | ||
| + | |gene_symbol=PLXDC2 | ||
| + | |gene_synonyms=FLJ14623 TEM7R | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21013 | ||
|nearest_ensembl=ENSG00000120594 | |nearest_ensembl=ENSG00000120594 | ||
|nearest_promoter_id=NM_032812 | |nearest_promoter_id=NM_032812 | ||
|nearest_refseq=NM_032812 | |nearest_refseq=NM_032812 | ||
|nearest_unigene=Hs.99472 | |nearest_unigene=Hs.99472 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=20143292 | ||
| + | |strand=+ | ||
|tata_box="-55(TTTTATATGGGC,+,0.00),53(CACCTTTAATGG,-,0.00),55(CCTTTAATGGCA,+,0.00)" | |tata_box="-55(TTTTATATGGGC,+,0.00),53(CACCTTTAATGG,-,0.00),55(CCTTTAATGGCA,+,0.00)" | ||
| + | |transcript_name=AK027529 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104186.1 | |tss_id=hg_104186.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:41, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK027529 |
|---|---|
| Distance: | 99 |
| Num_trans: | 1 |
| All_trans: | AK027529:99 |
TATA-Box annotation
| Distance to TSS: | 326856 |
|---|---|
| Nearest PromoterID: | NM_032812 |
| Entrez ID: | 84898 |
| Nearest Unigene: | Hs.99472 |
| Nearest Refseq: | NM_032812 |
| Nearest Ensembl: | ENSG00000120594 |
| Gene Name: | plexin domain containing 2 |
| Gene Alias: | TEM7R |
| Gene Description: | plexin domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-55(TTTTATATGGGC,+,0.00),53(CACCTTTAATGG,-,0.00),55(CCTTTAATGGCA,+,0.00)" |
