Difference between revisions of "TSS:Hg 104211.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=71 |entrez_id=8028 |gc_percent=0.781095 |gene_alias=AF10 |gene_description="myeloid/lymphoid or mixed-lineage leukemia; translo...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000377072.7:-27 uc001iqs.4:-27 NM_001195630:-28 NM_001195628:-28 NM_004641:-28 NM_001195627:-28 ENST00000377100.7:-35 uc001iqq.3:-35 BC032532:-35 U13948:51 ENST00000307729.11:56 uc001iqt.4:56 BC065376:56 BC080577:56 ENST00000377091.6:58 uc001iqr.3:58 AB209755:179 ENST00000471315.5:181 uc057sdv.1:181 BC052798:187 BC094844:190 BC129946:192 ENST00000495130.5:203 uc057sdw.1:203 ENST00000621220.4:358 ENST00000377059.7:358 NM_001195626:358 uc057sdx.1:358 uc021pny.2:358 CU687346:358 BC156206:358 BC156949:358 AY598745:358 KJ892460:358 ENST00000476557.5:415 uc057sdy.1:415 ENST00000430455.1:462 ENST00000462999.5:462 ENST00000480415.5:462 ENST00000479634.1:462 uc057sdz.1:462 uc009xkf.2:462 uc009xke.2:462 uc001iqx.2:462 AF060927:462 AF060934:462 AF060935:462 AF060936:462 AF060937:462 AF060938:462 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-27 | ||
|distance_to_tss=71 | |distance_to_tss=71 | ||
| + | |end=21534287 | ||
|entrez_id=8028 | |entrez_id=8028 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
|gene_alias=AF10 | |gene_alias=AF10 | ||
|gene_description="myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" | |gene_description="myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" | ||
| − | |gene_name=MLLT10 | + | |gene_id=8028 |
| + | |gene_name="myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" | ||
| + | |gene_source=HGNC:16063 | ||
| + | |gene_symbol=MLLT10 | ||
| + | |gene_synonyms=AF10 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16063 | ||
|nearest_ensembl=ENSG00000078403 | |nearest_ensembl=ENSG00000078403 | ||
|nearest_promoter_id=NR_136736 | |nearest_promoter_id=NR_136736 | ||
|nearest_refseq=NM_004641 | |nearest_refseq=NM_004641 | ||
|nearest_unigene=Hs.30385 | |nearest_unigene=Hs.30385 | ||
| + | |num_trans=50 | ||
| + | |species=human | ||
| + | |start=21534199 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000377072.7 uc001iqs.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104211.1 | |tss_id=hg_104211.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P55197 | ||
}} | }} | ||
Revision as of 20:42, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000377072.7 uc001iqs.4 |
|---|---|
| Distance: | -27 |
| Num_trans: | 50 |
| All_trans: | ENST00000377072.7:-27 uc001iqs.4:-27 NM_001195630:-28 NM_001195628:-28 NM_004641:-28 NM_001195627:-28 ENST00000377100.7:-35 uc001iqq.3:-35 BC032532:-35 U13948:51 ENST00000307729.11:56 uc001iqt.4:56 BC065376:56 BC080577:56 ENST00000377091.6:58 uc001iqr.3:58 AB209755:179 ENST00000471315.5:181 uc057sdv.1:181 BC052798:187 BC094844:190 BC129946:192 ENST00000495130.5:203 uc057sdw.1:203 ENST00000621220.4:358 ENST00000377059.7:358 NM_001195626:358 uc057sdx.1:358 uc021pny.2:358 CU687346:358 BC156206:358 BC156949:358 AY598745:358 KJ892460:358 ENST00000476557.5:415 uc057sdy.1:415 ENST00000430455.1:462 ENST00000462999.5:462 ENST00000480415.5:462 ENST00000479634.1:462 uc057sdz.1:462 uc009xkf.2:462 uc009xke.2:462 uc001iqx.2:462 AF060927:462 AF060934:462 AF060935:462 AF060936:462 AF060937:462 AF060938:462 |
TATA-Box annotation
| Distance to TSS: | 71 |
|---|---|
| Nearest PromoterID: | NR_136736 |
| Entrez ID: | 8028 |
| Nearest Unigene: | Hs.30385 |
| Nearest Refseq: | NM_004641 |
| Nearest Ensembl: | ENSG00000078403 |
| Gene Name: | "myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" |
| Gene Alias: | AF10 |
| Gene Description: | "myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10" |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
