Difference between revisions of "TSS:Hg 104238.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=2367 |entrez_id=100532731 |gc_percent=0.393035 |gene_alias=- |gene_description=COMMD3-BMI1 readthrough |gene_name=COMMD3-BMI1 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000602395.1:-447 uc057sfg.1:-447 ENST00000471350.1:-476 uc057sff.1:-476 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=-447 | ||
|distance_to_tss=2367 | |distance_to_tss=2367 | ||
| + | |end=22318753 | ||
|entrez_id=100532731 | |entrez_id=100532731 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=COMMD3-BMI1 readthrough | |gene_description=COMMD3-BMI1 readthrough | ||
| − | |gene_name=COMMD3-BMI1 | + | |gene_id=100532731 23412 |
| + | |gene_name=COMM domain containing 3; COMMD3-BMI1 readthrough | ||
| + | |gene_source=HGNC:23332 HGNC:48326 | ||
| + | |gene_symbol=COMMD3 COMMD3-BMI1 | ||
| + | |gene_synonyms=BUP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23332 HGNC:48326 | ||
|nearest_ensembl=ENSG00000269897 | |nearest_ensembl=ENSG00000269897 | ||
|nearest_promoter_id=NM_001204062 | |nearest_promoter_id=NM_001204062 | ||
|nearest_refseq=NM_001204062 | |nearest_refseq=NM_001204062 | ||
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=22318747 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000602395.1 uc057sfg.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104238.1 | |tss_id=hg_104238.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000602395.1 uc057sfg.1 |
|---|---|
| Distance: | -447 |
| Num_trans: | 4 |
| All_trans: | ENST00000602395.1:-447 uc057sfg.1:-447 ENST00000471350.1:-476 uc057sff.1:-476 |
TATA-Box annotation
| Distance to TSS: | 2367 |
|---|---|
| Nearest PromoterID: | NM_001204062 |
| Entrez ID: | 100532731 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_001204062 |
| Nearest Ensembl: | ENSG00000269897 |
| Gene Name: | COMM domain containing 3; COMMD3-BMI1 readthrough |
| Gene Alias: | - |
| Gene Description: | COMMD3-BMI1 readthrough |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
