Difference between revisions of "TSS:Hg 104244.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=215 |entrez_id=648 |gc_percent=0.78607 |gene_alias=FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 |gene_description="BMI1 proto-oncogene,...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PCGF4= | ||
| + | |RNF51= | ||
| + | |all_trans=ENST00000602523.1:26 uc057sfh.1:26 ENST00000456675.2:152 uc057sfi.1:152 L13689:-181 ENST00000376663.7:-207 uc001irh.4:-207 BC011652:-207 NM_005180:-208 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=26 | ||
|distance_to_tss=215 | |distance_to_tss=215 | ||
| + | |end=22321433 | ||
|entrez_id=648 | |entrez_id=648 | ||
| + | |flvi-2/bmi-1= | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 | |gene_alias=FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 | ||
|gene_description="BMI1 proto-oncogene, polycomb ring finger" | |gene_description="BMI1 proto-oncogene, polycomb ring finger" | ||
| − | |gene_name=BMI1 | + | |gene_id=648 |
| + | |gene_name="BMI1 proto-oncogene, polycomb ring finger" | ||
| + | |gene_source=HGNC:1066 | ||
| + | |gene_symbol=BMI1 | ||
| + | |gene_synonyms=RNF51 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1066 | ||
|nearest_ensembl=ENSG00000168283 | |nearest_ensembl=ENSG00000168283 | ||
|nearest_promoter_id=NM_005180 | |nearest_promoter_id=NM_005180 | ||
|nearest_refseq=NM_005180 | |nearest_refseq=NM_005180 | ||
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=22321417 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000602523.1 uc057sfh.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104244.1 | |tss_id=hg_104244.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:44, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000602523.1 uc057sfh.1 |
|---|---|
| Distance: | 26 |
| Num_trans: | 9 |
| All_trans: | ENST00000602523.1:26 uc057sfh.1:26 ENST00000456675.2:152 uc057sfi.1:152 L13689:-181 ENST00000376663.7:-207 uc001irh.4:-207 BC011652:-207 NM_005180:-208 |
TATA-Box annotation
| Distance to TSS: | 215 |
|---|---|
| Nearest PromoterID: | NM_005180 |
| Entrez ID: | 648 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_005180 |
| Nearest Ensembl: | ENSG00000168283 |
| Gene Name: | "BMI1 proto-oncogene, polycomb ring finger" |
| Gene Alias: | FLVI2/BMI1 |
| Gene Description: | "BMI1 proto-oncogene, polycomb ring finger" |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
