Difference between revisions of "TSS:Hg 104248.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=346 |entrez_id=648 |gc_percent=0.656716 |gene_alias=FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 |gene_description="BMI1 proto-oncogene,...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PCGF4= | ||
| + | |RNF51= | ||
| + | |all_trans=ENST00000456675.2:24 uc057sfi.1:24 ENST00000602523.1:-92 uc057sfh.1:-92 L13689:-314 ENST00000376663.7:-340 uc001irh.4:-340 BC011652:-340 NM_005180:-341 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=24 | ||
|distance_to_tss=346 | |distance_to_tss=346 | ||
| + | |end=22321561 | ||
|entrez_id=648 | |entrez_id=648 | ||
| + | |flvi-2/bmi-1= | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 | |gene_alias=FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 | ||
|gene_description="BMI1 proto-oncogene, polycomb ring finger" | |gene_description="BMI1 proto-oncogene, polycomb ring finger" | ||
| − | |gene_name=BMI1 | + | |gene_id=648 |
| + | |gene_name="BMI1 proto-oncogene, polycomb ring finger" | ||
| + | |gene_source=HGNC:1066 | ||
| + | |gene_symbol=BMI1 | ||
| + | |gene_synonyms=RNF51 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1066 | ||
|nearest_ensembl=ENSG00000168283 | |nearest_ensembl=ENSG00000168283 | ||
|nearest_promoter_id=NM_005180 | |nearest_promoter_id=NM_005180 | ||
|nearest_refseq=NM_005180 | |nearest_refseq=NM_005180 | ||
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=22321550 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000456675.2 uc057sfi.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104248.1 | |tss_id=hg_104248.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:44, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000456675.2 uc057sfi.1 |
|---|---|
| Distance: | 24 |
| Num_trans: | 9 |
| All_trans: | ENST00000456675.2:24 uc057sfi.1:24 ENST00000602523.1:-92 uc057sfh.1:-92 L13689:-314 ENST00000376663.7:-340 uc001irh.4:-340 BC011652:-340 NM_005180:-341 |
TATA-Box annotation
| Distance to TSS: | 346 |
|---|---|
| Nearest PromoterID: | NM_005180 |
| Entrez ID: | 648 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_005180 |
| Nearest Ensembl: | ENSG00000168283 |
| Gene Name: | "BMI1 proto-oncogene, polycomb ring finger" |
| Gene Alias: | FLVI2/BMI1 |
| Gene Description: | "BMI1 proto-oncogene, polycomb ring finger" |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
