Difference between revisions of "TSS:Hg 104275.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=-219 |entrez_id=256297 |gc_percent=0.736318 |gene_alias=PACA|PAGEN2|PTF1-p48|bHLHa29 |gene_description="pancreas specific transc...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PAGEN2= | ||
| + | |PTF1-p48= | ||
| + | |all_trans=ENST00000376504.3:7 uc001irp.4:7 AB463998:210 BC172252:210 BC172557:210 NM_178161:211 | ||
| + | |bHLHa29= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=7 | ||
|distance_to_tss=-219 | |distance_to_tss=-219 | ||
| + | |end=23192320 | ||
|entrez_id=256297 | |entrez_id=256297 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=PACA|PAGEN2|PTF1-p48|bHLHa29 | |gene_alias=PACA|PAGEN2|PTF1-p48|bHLHa29 | ||
|gene_description="pancreas specific transcription factor, 1a" | |gene_description="pancreas specific transcription factor, 1a" | ||
| − | |gene_name=PTF1A | + | |gene_id=256297 |
| + | |gene_name="pancreas specific transcription factor, 1a" | ||
| + | |gene_source=HGNC:23734 | ||
| + | |gene_symbol=PTF1A | ||
| + | |gene_synonyms=PTF1-p48 bHLHa29 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23734 | ||
|nearest_ensembl=ENSG00000168267 | |nearest_ensembl=ENSG00000168267 | ||
|nearest_promoter_id=NM_178161 | |nearest_promoter_id=NM_178161 | ||
|nearest_refseq=NM_178161 | |nearest_refseq=NM_178161 | ||
|nearest_unigene=Hs.351503 | |nearest_unigene=Hs.351503 | ||
| + | |num_trans=6 | ||
| + | |species=human | ||
| + | |start=23192304 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000376504.3 uc001irp.4 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104275.1 | |tss_id=hg_104275.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q7RTS3 | ||
}} | }} | ||
Revision as of 20:45, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000376504.3 uc001irp.4 |
|---|---|
| Distance: | 7 |
| Num_trans: | 6 |
| All_trans: | ENST00000376504.3:7 uc001irp.4:7 AB463998:210 BC172252:210 BC172557:210 NM_178161:211 |
TATA-Box annotation
| Distance to TSS: | -219 |
|---|---|
| Nearest PromoterID: | NM_178161 |
| Entrez ID: | 256297 |
| Nearest Unigene: | Hs.351503 |
| Nearest Refseq: | NM_178161 |
| Nearest Ensembl: | ENSG00000168267 |
| Gene Name: | "pancreas specific transcription factor, 1a" |
| Gene Alias: | PACA |
| Gene Description: | "pancreas specific transcription factor, 1a" |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
