Difference between revisions of "TSS:Hg 10435.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=118 |entrez_id=200197 |gc_percent=0.512438 |gene_alias=C1orf126 |gene_description=TMEM51 antisense RNA 1 |gene_name=TMEM51-AS1 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000404665.3:-53 uc001avv.5:-53 AK124431:-53 KJ901179:-63 BC128126:-97 BC128127:-97 ENST00000310916.6:-115 NR_027136:-115 uc009voh.3:-115 AK074283:-115 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-53 | ||
|distance_to_tss=118 | |distance_to_tss=118 | ||
| + | |end=15152349 | ||
|entrez_id=200197 | |entrez_id=200197 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
|gene_alias=C1orf126 | |gene_alias=C1orf126 | ||
|gene_description=TMEM51 antisense RNA 1 | |gene_description=TMEM51 antisense RNA 1 | ||
| − | |gene_name=TMEM51-AS1 | + | |gene_id=200197 |
| + | |gene_name=TMEM51 antisense RNA 1 | ||
| + | |gene_source=HGNC:26301 | ||
| + | |gene_symbol=TMEM51-AS1 | ||
| + | |gene_synonyms=FLJ23703 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:26301 | ||
|nearest_ensembl=ENSG00000175147 | |nearest_ensembl=ENSG00000175147 | ||
|nearest_promoter_id=NR_027136 | |nearest_promoter_id=NR_027136 | ||
|nearest_refseq=NM_182534 | |nearest_refseq=NM_182534 | ||
|nearest_unigene=Hs.531424 | |nearest_unigene=Hs.531424 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=15152343 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000404665.3 uc001avv.5 AK124431 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10435.1 | |tss_id=hg_10435.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:48, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000404665.3 uc001avv.5 AK124431 |
|---|---|
| Distance: | -53 |
| Num_trans: | 10 |
| All_trans: | ENST00000404665.3:-53 uc001avv.5:-53 AK124431:-53 KJ901179:-63 BC128126:-97 BC128127:-97 ENST00000310916.6:-115 NR_027136:-115 uc009voh.3:-115 AK074283:-115 |
TATA-Box annotation
| Distance to TSS: | 118 |
|---|---|
| Nearest PromoterID: | NR_027136 |
| Entrez ID: | 200197 |
| Nearest Unigene: | Hs.531424 |
| Nearest Refseq: | NM_182534 |
| Nearest Ensembl: | ENSG00000175147 |
| Gene Name: | TMEM51 antisense RNA 1 |
| Gene Alias: | C1orf126 |
| Gene Description: | TMEM51 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.03 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
